Hi,
I see the most recent version of Singularity available is
Singularity-2.4.2-GCC-5.4.0-2.26.eb
Is there any particular reason why there are no easyconfigs for version
3?
Regards
Loris
--
Dr. Loris Bennett (Mr.)
ZEDAT, Freie Universität Berlin Email loris.benn...@fu-berlin.de
Hi Loris
In singularity 3.x the developers did a new implementation using golang
instead of the python/C used in 2.x
https://archive.sylabs.io/2018/02/singularity-golang/
This changed the build procedure for 3.x so the existing easyconfigs no
longer work with 3.x . Someone would need to create ne
Hi Pablo,
Thanks for the info. Is there some particular reason why one would want
to use a system RPM? I generally prefer to install all our software as
modules to an NFS share, so there is no issue of roll-out to the cluster
nodes.
I'll look into writing an easyconfig for Singularity 3.
Cheer
Dear all,
We're using the attached EasyConfig to deploy Singularity 3.3.0.
Haven't cleaned it up enough for a PR, and there's new a new v3.4.0 with
support for encrypted containers that this EasyConfig should be adapted
for, but I haven't had time to try it yet and see if any changes are needed.
On 09/09/2019 16:22, Loris Bennett wrote:
Hi Pablo,
Thanks for the info. Is there some particular reason why one would want
to use a system RPM? I generally prefer to install all our software as
modules to an NFS share, so there is no issue of roll-out to the cluster
nodes.
There's a couple
Hi Loris,
FYI, the EPEL repository provides Singularity for CentOS/RHEL 7, though
currently only version 3.2:
$ yum list singularity
Available Packages
singularity.x86_64 3.2.1-1.1.el7 epel
/Ole
On 9/9/19 4:04 PM, Loris Bennett wrote:
I see the most recent version of Singularity av
On 10/09/2019 08:33, Ole Holm Nielsen wrote:
Hi Loris,
FYI, the EPEL repository provides Singularity for CentOS/RHEL 7, though
currently only version 3.2:
$ yum list singularity
Available Packages
singularity.x86_64 3.2.1-1.1.el7 epel
EPEL-testing should have 3.4.0, see
https://bo
Kenneth Hoste writes:
> On 10/09/2019 08:33, Ole Holm Nielsen wrote:
>> Hi Loris,
>>
>> FYI, the EPEL repository provides Singularity for CentOS/RHEL 7, though
>> currently only version 3.2:
>>
>> $ yum list singularity
>> Available Packages
>> singularity.x86_64 3.2.1-1.1.el7 epel
>
>
On Tue, Sep 10, 2019 at 11:03 AM Loris Bennett
wrote:
>
> Thanks for the information. I appreciate the security concerns,
> although it seems to me that an EasyBuild version could be the best
> solution. That way I can build a new version as soon as it comes out
> and deploy it immediately, wit
Hi Valentin,
Thanks for the EasyConfig. I have modified it for 3.4.0, which was
mainly just adding 'cryptsetup' to 'osdependencies' (see attachment).
However, I am getting the error:
== 2019-09-12 11:20:26,246 build_log.py:163 ERROR EasyBuild crashed with an
error (at
easybuild/software/Easy
Dear Loris,
We're not running the install step as privileged with sudo from within
EasyBuild.
That's why in the .eb file there were comments for the 'next steps after
installation' that are (a reminder and) taken care of outside of the EB
workflow.
It may be possible to allow the sudo commands fr
Dear Valentin,
I wasn't trying to run the install step either and left the bits you
commented out commented out.
The problem seems to be that
preinstallopts = 'cd build && '
leads to
cd build && make install
which fails. I thus modified skipsteps to additionally ignore the
install ste
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