[O] graphics for html and latex / pdf export?

2014-09-03 Thread Rainer M Krug
export as inline images (e.g. png)? I remember some use of imagemagic? I could obviously do this manually in each code block, but I would prefer a general solution, so that I can forget about it and it is working. Thanks, Rainer -- Rainer M. Krug email: Raineratkrugsdotde PGP: 0x0F52F982

Re: [O] Moving my init.el to Org

2014-09-02 Thread Rainer M Krug
. I use my own package to navigate and maintain code (https://github.com/abo-abo/lispy). Here's a short screencast if you haven't seen it before: https://vimeo.com/86894158. regards, Oleh -- Rainer M. Krug email: Raineratkrugsdotde PGP: 0x0F52F982 pgp7vARmadsSZ.pgp Description: PGP

Re: [O] progress indicator for code blocks?

2014-09-02 Thread Rainer M Krug
. What I would really like is an hourglass or some spinning thing. Does anyone know how to get that (in a cross-platform way)? -- Rainer M. Krug email: Raineratkrugsdotde PGP: 0x0F52F982 pgpOcdNteDqfe.pgp Description: PGP signature

Re: [O] org-ref no key found

2014-08-30 Thread Julian M. Burgos
-file and the bib file)? Julian M. Burgos jul...@hafro.is writes: Hi John, No, they still do not work even after I click on the bibliography link and get my .bib file opened. Julian John Kitchin writes: Julian M. Burgos jul...@hafro.is writes: If you click on the bibliography link

[O] org-ref no key found

2014-08-29 Thread Julian M. Burgos
Hello everyone, I am playing around with Joh Kitchin's excellent org-ref, and I am having a few issues. In my .emacs file I have set up the values for the org-ref-bibliography-notes, org-ref-default-bibliography, and org-ref-pdf-directory. With this I can access my .bib database and use

Re: [O] org-ref no key found

2014-08-29 Thread Julian M. Burgos
Hi John, No, they still do not work even after I click on the bibliography link and get my .bib file opened. Julian John Kitchin writes: Julian M. Burgos jul...@hafro.is writes: If you click on the bibliography link to open the file, and then go back to your org-file, do the cite links

[O] How can I calculate the age of a headline?

2014-08-19 Thread M
In my task lists, I'm working with scheduled and deadline dates. However, it would also often be very interesting, how old a task is, how long it is lurking around on my lists.. Therefore it would be interesting to find the oldest timestamp below this heading and calculate the difference in days

Re: [O] How can I calculate the age of a headline?

2014-08-19 Thread M
the age of a headline? M elwood...@web.de writes: In my task lists, I'm working with scheduled and deadline dates. However, it would also often be very interesting, how old a task is, how long it is lurking around on my lists.. I copied Bernt Hansens setup for toggling automatic insertion

[O] Can I export/publish an agenda or todo tree (or similar), like a filtered toc linked to the original export page?

2014-08-16 Thread M
Hi, I have to hand over a lot of projects to my colleagues. Org-mode is incredibly useful here, as it lets me export all the notes to html and I get wiki-like, cross-linked pages with my notes and tasks. The problem is: I have way too many notes and for the colleagues it is important to get an

[O] org-agenda-write to .org exports headings in reversed order?!

2014-08-16 Thread M
Hi, I'm still experimenting with agenda export and I found that I can write an agenda to an org-mode file by C-x C-w (org-agenda-write). However, if I do that and select filename.org as target, I get all headings in the agenda, but the last one first and the first one last. Is there an

Re: [O] [PATCH] ox-latex.el: add out-of-the-box fontification for makefile source block

2014-08-14 Thread Rainer M Krug
Thanks a lot Bastien - this got lost in some data chaos my side (small safe with backup drive inside was stolen.) Cheers,  Rainer — Sent from Mailbox on iPhone On Mon, Jul 28, 2014 at 7:24 PM, Bastien b...@gnu.org wrote: Hi Rainer, Rainer M Krug rai...@krugs.de writes: Will do so

Re: [O] R code block produces only partial output

2014-08-09 Thread Rainer M Krug
to a file. zz - file(all.Rout, open = wt) sink(zz) sink(zz, type = message) try(log(a)) ## back to the console sink(type = message) sink() file.show(all.Rout) #+end_src This combined with a try() bloxk could work? Cheers, Rainer HTH, Chuck -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc

Re: [O] R code block produces only partial output

2014-08-09 Thread Rainer M Krug
and warnings in R should trigger errors in elisp or if they should be ignored and the error message displayed and the export should be continued. Cheers, Rainer Best, Chuck -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre

Re: [O] Problems with org-export: byte-code: Invalid function: 0

2014-08-07 Thread M
Von: Nick Dokos ndo...@gmail.com Datum: Thu, 07 Aug 2014 06:35:17 -0400 An: emacs-orgmode@gnu.org Betreff: Re: [O] Problems with org-export: byte-code: Invalid function: 0 Martin Beck elwood...@web.de writes: Nick Dokos ndokos at gmail.com writes: This shows a problem evaluating a

Re: [O] Export org-mode buffer to dynamic html document (collapse/expand details)

2014-08-03 Thread M
Von: Eric Abrahamsen e...@ericabrahamsen.net Datum: Fri, 01 Aug 2014 09:04:07 +0800 An: emacs-orgmode@gnu.org Betreff: Re: [O] Export org-mode buffer to dynamic html document (collapse/expand details) Martin Beck elwood...@web.de writes: it would be great if the text below headings

Re: [O] Export org-mode buffer to dynamic html document (collapse/expand details)

2014-08-02 Thread M
://orgmode.org/worg/code/org-info-js/index.org.html There are described various possible views in html with folding/unfolding, similar emacs folding. You can switch between the views with m, goto (n)ext or (p)revious item, help with ? IIRC You can realize this with the follwoing to lines

Re: [O] Export org-mode buffer to dynamic html document (collapse/expand details)

2014-08-02 Thread M
Von: Daniel Clemente n142...@gmail.com Datum: Fri, 01 Aug 2014 03:01:31 +0700 An: Martin Beck elwood...@web.de Cc: emacs orgmode-mailinglist emacs-orgmode@gnu.org Betreff: Re: [O] Export org-mode buffer to dynamic html document (collapse/expand details) I did a custom solution, very

Re: [O] [patch] [babel] Patches to fix tangling and variable transfer of tables in R

2014-07-29 Thread Rainer M Krug
Bastien b...@gnu.org writes: Hi Rainer, Rainer M Krug rai...@krugs.de writes: Amended patches attached. Applied, thanks, Thanks, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology

Re: [O] Collecting unique selling proposition (USP) of Org-mode

2014-07-23 Thread M
Von: Thorsten Jolitz tjol...@gmail.com Datum: Wed, 23 Jul 2014 09:14:10 +0200 An: emacs-orgmode@gnu.org Betreff: Re: [O] Collecting unique selling proposition (USP) of Org-mode https://en.wikipedia.org/wiki/List_of_personal_information_managers OK, the list is there, but it is not

Re: [O] [PATCH] ox-latex.el: add out-of-the-box fontification for makefile source block

2014-07-22 Thread Rainer M Krug
Nicolas Goaziou m...@nicolasgoaziou.fr writes: Hello, Rainer M Krug rai...@krugs.de writes: THis patch adds out-of-the-box fontification of makefile source code blocks when using the package listings. As the makefile code blocks are named =makefile= and the name of the language definition

Re: [O] Collecting unique selling proposition (USP) of Org-mode

2014-07-22 Thread M
Von: Karl Voit devn...@karl-voit.at Organisation: www.karl-voit.at Antworten an: Karl Voit news1...@karl-voit.at Datum: Tue, 1 Jul 2014 21:07:32 +0200 An: emacs-orgmode@gnu.org Betreff: Re: [O] Collecting unique selling proposition (USP) of Org-mode I think the best thing to compare

Re: [O] SOLVED: source code block language 'makefile' and listings package

2014-07-11 Thread Rainer M Krug
Envoyé de mon iPhone Le 8 juil. 2014 à 14:40, Nick Dokos ndo...@gmail.com a écrit : Rainer M Krug rai...@krugs.de writes: Much simpler then that: I simply changed the variable org-latex-listings-langs to include makefile: , | (setq org-latex-listings-langs | '((emacs

Re: [O] An Org centric research lab: Goodbye MS word, excel, and powerpoint

2014-07-10 Thread Doyley, Marvin M.
Good point. Thanks On Jul 10, 2014, at 8:45 PM, Grant Rettke g...@wisdomandwonder.commailto:g...@wisdomandwonder.com wrote: Doing all of your reproducible research with free software will maximize the number of people who may reproduce your research. MATLAB is a great, great tool, and not many

[O] [PATCH] ox-latex.el: add out-of-the-box fontification for makefile source block

2014-07-09 Thread Rainer M Krug
THis patch adds out-of-the-box fontification of makefile source code blocks when using the package listings. As the makefile code blocks are named =makefile= and the name of the language definition in the package =listings= is m=make= the value (makefile make) is added to the variable org-latex

Re: [O] emails written in Org Mode

2014-07-09 Thread Noorul Islam K M
Ken Mankoff mank...@gmail.com writes: Hi Thorsten, On a recent thread you wrote: ... *outorg-edit-buffer* (where I write my message-mode email in full org-mode). I already write emails in emacs. I'm interested in being able to compose emails using Org Mode. I see you use gnus. I use

Re: [O] An Org centric research lab: Goodbye MS word, excel, and powerpoint

2014-07-09 Thread Doyley, Marvin M.
welcome any advise or tips you may have Best Wishes, M On Jul 9, 2014, at 3:08 PM, John Kitchin jkitc...@andrew.cmu.edu wrote: That is great! Congratulations, and thanks for sharing. I have also converted my group into an org-centric group. Did you find many challenges in implementing

Re: [O] SOLVED: source code block language 'makefile' and listings package

2014-07-09 Thread Rainer M Krug
Nick Dokos ndo...@gmail.com writes: Rainer M Krug rai...@krugs.de writes: Much simpler then that: I simply changed the variable org-latex-listings-langs to include makefile: , | (setq org-latex-listings-langs | '((emacs-lisp Lisp) ... | (makefile make

[O] SOLVED: source code block language 'makefile' and listings package

2014-07-08 Thread Rainer M Krug
t...@tsdye.com (Thomas S. Dye) writes: Aloha Rainer, Rainer M Krug rai...@krugs.de writes: Hi I used the source block language 'makefile' #+begin_src R makefile ... #+end_src and now I would like top export this block to html. I am using the listings package

[O] An Org centric research lab: Goodbye MS word, excel, and powerpoint

2014-07-08 Thread Doyley, Marvin M.
would like to thank Carsten and all the other contributors for creating such an awesome research tool. Cheers, M

Re: [O] [patch] [babel] Patches to fix tangling and variable transfer of tables in R

2014-07-08 Thread Rainer M Krug
Rainer M Krug rai...@krugs.de writes: Just to ping these patches for application. Cheers, Rainer Nicolas Goaziou m...@nicolasgoaziou.fr writes: Hello, Rainer M Krug rai...@krugs.de writes: Attached please find two patches ready for application to fix that table variables were

[O] Syntax highlighting on export to html with minimal init.el WAS: A simple org tangle and weave makefile

2014-07-07 Thread Rainer M Krug
, 2014 at 10:26 AM, Rainer M Krug rai...@krugs.de wrote: Following an older thread. I would like to use a make file to export my document, and I am essentially following Eric's suggestion. But I have some problems which I did not manage to solve: html: I would like to have syntax highlighting

Re: [O] A simple org tangle and weave makefile

2014-07-04 Thread Rainer M Krug
in wonder.” --Socrates ((λ (x) (x x)) (λ (x) (x x))) “Life has become immeasurably better since I have been forced to stop taking it seriously.” --ThompsonH -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence

[O] source code block language 'makefile' and listings package

2014-07-04 Thread Rainer M Krug
the tex exporter to export 'makefile' blocks as language 'make', or can I easily tell listings that the language 'makefile' is equal to 'make'? Thanks, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence

Re: [O] [patch] [babel] Patches to fix tangling and variable transfer of tables in R

2014-07-01 Thread Rainer M Krug
Nicolas Goaziou m...@nicolasgoaziou.fr writes: Hello, Rainer M Krug rai...@krugs.de writes: Attached please find two patches ready for application to fix that table variables were not usable adter tangling as temporary files were used. These patches were discussed in the thread [babel

Re: [O] [patch] [babel] Patches to fix tangling and variable transfer of tables in R

2014-07-01 Thread Rainer M Krug
Nicolas Goaziou m...@nicolasgoaziou.fr writes: Hello, Rainer M Krug rai...@krugs.de writes: Attached please find two patches ready for application to fix that table variables were not usable adter tangling as temporary files were used. These patches were discussed in the thread [babel

[O] Working example of org-ref in action?

2014-07-01 Thread Rainer M Krug
) I have a managed to export to html, but I want to use LaTeX - what do I have to add to the .org file to be able to do this? 2) Is there somewhere a small working example which uses the different citation formats and exports to LaTeX but also html? Cheers, Rainer -- Rainer M. Krug, PhD

Re: [O] Using #+NAME for single value, not table?

2014-06-30 Thread Rainer M Krug
Aaron Ecay aarone...@gmail.com writes: Hi Rainer, 2014ko ekainak 26an, Rainer M Krug-ek idatzi zuen: Hi I use #+NAME to define some parameters for my analysis, which works quite nice for tables. but I would now like to use the same apprioach for values, e.g. a single number, but I

[O] [patch] [babel] Patches to fix tangling and variable transfer of tables in R

2014-06-30 Thread Rainer M Krug
Sep 17 00:00:00 2001 From: Rainer M. Krug r.m.k...@gmail.com Date: Fri, 20 Jun 2014 22:19:59 +0200 Subject: [PATCH 1/2] lisp/ob-R.el: Fix tangling with tables * lisp/ob-R.el (org-babel-R-assign-elisp): Fix variable transfer of tables by using text connections in R instead of files. Variable

[O] Pushing and pulling to google calendar

2014-06-29 Thread Doyley, Marvin M.
Hi Everybody, Is there a way to sync org-agenda with google calendar so that I can exploit googles calendar reminder. I wish there was a way to send calendar reminders (pop-up, emails, text message ) from org-mode rather than going through google. Best Wishes, M Sent from my iPad

Re: [O] Collecting unique selling proposition (USP) of Org-mode

2014-06-28 Thread M
Von: Karl Voit devn...@karl-voit.at Organisation: www.karl-voit.at Antworten an: Karl Voit news1...@karl-voit.at Datum: Sat, 28 Jun 2014 13:43:31 +0200 An: emacs-orgmode@gnu.org Betreff: [O] Collecting unique selling proposition (USP) of Org-mode Hi! I was wondering if there are

Re: [O] Collecting unique selling proposition (USP) of Org-mode

2014-06-28 Thread M
Organisation: www.karl-voit.at Antworten an: Karl Voit news1...@karl-voit.at Datum: Sat, 28 Jun 2014 15:13:05 +0200 An: emacs-orgmode@gnu.org Betreff: Re: [O] Collecting unique selling proposition (USP) of Org-mode Hi Martin! * M elwood...@web.de wrote: Von: Karl Voit devn...@karl-voit.at

Re: [O] Collecting unique selling proposition (USP) of Org-mode

2014-06-28 Thread Rainer M Krug
Envoyé de mon iPhone Le 28 juin 2014 à 13:43, Karl Voit devn...@karl-voit.at a écrit : Hi! I was wondering if there are people out there who also need Org-mode features that are *not part of any other software solution*. For the usual question why should I learn Emacs/Org-mode? I'd

Re: [O] Collecting unique selling proposition (USP) of Org-mode

2014-06-28 Thread M
Von: Rainer M Krug r.m.k...@gmail.com Datum: Sat, 28 Jun 2014 15:41:14 +0200 An: Karl Voit news1...@karl-voit.at Cc: emacs-orgmode@gnu.org emacs-orgmode@gnu.org Betreff: Re: [O] Collecting unique selling proposition (USP) of Org-mode Envoyé de mon iPhone good idea what to add

Re: [O] Collecting unique selling proposition (USP) of Org-mode

2014-06-28 Thread M
Von: Karl Voit devn...@karl-voit.at Organisation: www.karl-voit.at Antworten an: Karl Voit news1...@karl-voit.at Datum: Sat, 28 Jun 2014 15:13:05 +0200 An: emacs-orgmode@gnu.org Betreff: Re: [O] Collecting unique selling proposition (USP) of Org-mode Hi Martin! * M elwood...@web.de

Re: [O] Collecting unique selling proposition (USP) of Org-mode

2014-06-28 Thread M
Von: Karl Voit devn...@karl-voit.at Organisation: www.karl-voit.at Antworten an: Karl Voit news1...@karl-voit.at Datum: Sat, 28 Jun 2014 16:28:47 +0200 An: emacs-orgmode@gnu.org Betreff: Re: [O] Collecting unique selling proposition (USP) of Org-mode * M elwood...@web.de wrote: Yes

Re: [O] Collecting unique selling proposition (USP) of Org-mode

2014-06-28 Thread M
Von: David Masterson dsmaster...@gmail.com Datum: Sat, 28 Jun 2014 22:04:08 -0700 An: emacs-orgmode@gnu.org Betreff: Re: [O] Collecting unique selling proposition (USP) of Org-mode M elwood...@web.de writes: that's a very good idea. However, really _unique_ selling points might

Re: [O] BUG variable expansion with table

2014-06-27 Thread Rainer M Krug
Andreas Leha andreas.l...@med.uni-goettingen.de writes: Hi Rainer, Rainer M Krug rai...@krugs.de writes: Hi there seems to be a bug in the table transfer. The org file below evaluates as shown, i.e. the TABLE_BLOCK contains one column less then it should as the first column is discarded

Re: [O] Using #+NAME for single value, not table?

2014-06-27 Thread Rainer M Krug
t...@tsdye.com (Thomas S. Dye) writes: Aloha Rainer, Rainer M Krug rai...@krugs.de writes: Hi I use #+NAME to define some parameters for my analysis, which works quite nice for tables. but I would now like to use the same apprioach for values, e.g. a single number, but I don't manage

[O] make vanilla not working on OSX?

2014-06-27 Thread Rainer M Krug
get: , | 03:10:14 {master} ~/.emacs.d/org-git$ make vanilla | emacs: standard input is not a tty ` OSX has no virtual consoles as Linux - so I can't switch to one. How can I use ~make vanilla~ on OSX? Thanks, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc

[O] Using #+NAME for single value, not table?

2014-06-26 Thread Rainer M Krug
works, but how do I get RNGSEED to be 13? Thanks, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South Africa Tel : +33 - (0)9 53 10 27 44 Cell: +33

Re: [O] :header-args: over several lines?

2014-06-26 Thread Rainer M Krug
Aaron Ecay aarone...@gmail.com writes: 2014ko ekainak 25an, Rainer M Krug-ek idatzi zuen: Hi I want to add many variables to a subtree. But it seems that :header-args: only allows one line - is this true? In my case, this line would be exceedingly long and very difficult to debug

[O] org-ref in action

2014-06-26 Thread Doyley, Marvin M.
Hi John, Thanks for sharing. My students and I love it. Cheers, M

[O] BUG variable expansion with table

2014-06-25 Thread Rainer M Krug
species number scenario scenario Type of forest :END: --8---cut here---end---8--- -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch

[O] :header-args: over several lines?

2014-06-25 Thread Rainer M Krug
Hi I want to add many variables to a subtree. But it seems that :header-args: only allows one line - is this true? In my case, this line would be exceedingly long and very difficult to debug. Is there a way of having :header-args: span several lines (like var+)? Thanks, Rainer -- Rainer M

[O] Tangling an org table to tab delimited format?

2014-06-25 Thread Rainer M Krug
obviously execute R (or elisp code) to create the code, but I would prefer to have it while tangling. Thanks, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South

Re: [O] Enabling another language in org-babel

2014-06-24 Thread Rainer M Krug
://orgmode.org/w/worg.git/blob/HEAD:/org-contrib/babel/ob-template.el [2] http://orgmode.org/worg/org-contribute.html -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South

Re: [O] [PATCH] -for review- Tangling with variable transfer of variables

2014-06-24 Thread Rainer M Krug
Charles C. Berry ccbe...@ucsd.edu writes: On Mon, 23 Jun 2014, Rainer M Krug wrote: One more question concerning the variable transfer of tables: , |(let ((file (orgtbl-to-tsv value '(:fmt org-babel-R-quote-tsv-field))) | (header (if (or (eq (nth 1 value) 'hline) colnames

Re: [O] [PATCH] -for review- Tangling with variable transfer of variables

2014-06-24 Thread Rainer M Krug
Charles C. Berry ccbe...@ucsd.edu writes: On Mon, 23 Jun 2014, Rainer M Krug wrote: Charles C. Berry ccbe...@ucsd.edu writes: V On Fri, 20 Jun 2014, Rainer M Krug wrote: Attached please find =the reworked patch. 1) uses local() and closes connection 2) does not leave a variable cal;led

Re: [O] [PATCH] -for review- Tangling with variable transfer of variables

2014-06-23 Thread Rainer M Krug
Charles C. Berry ccbe...@ucsd.edu writes: On Fri, 20 Jun 2014, Rainer M Krug wrote: Attached please find =the reworked patch. 1) uses local() and closes connection 2) does not leave a variable cal;led file behind Seems to work on a few test cases. I'd move the strings to defconsts

Re: [O] [PATCH] -for review- Tangling with variable transfer of variables

2014-06-23 Thread Rainer M Krug
, 20 Jun 2014, Rainer M Krug wrote: Attached please find =the reworked patch. 1) uses local() and closes connection 2) does not leave a variable cal;led file behind Seems to work on a few test cases. I'd move the strings to defconsts. Putting a newline before each `%S' will outdent

Re: [O] [PATCH] -for review- Tangling with variable transfer of variables

2014-06-23 Thread Rainer M Krug
Charles C. Berry ccbe...@ucsd.edu writes: V On Fri, 20 Jun 2014, Rainer M Krug wrote: Attached please find =the reworked patch. 1) uses local() and closes connection 2) does not leave a variable cal;led file behind Seems to work on a few test cases. I'd move the strings to defconsts

Re: [O] [PATCH] -for review- Tangling with variable transfer of variables

2014-06-23 Thread Rainer M Krug
Aaron Ecay aarone...@gmail.com writes: Hi Rainer, 2014ko ekainak 21an, Charles C. Berry-ek idatzi zuen: On Fri, 20 Jun 2014, Rainer M Krug wrote: Attached please find =the reworked patch. 1) uses local() and closes connection 2) does not leave a variable cal;led file behind

Re: [O] [PATCH] -for review- Tangling with variable transfer of variables

2014-06-20 Thread Rainer M Krug
Aaron Ecay aarone...@gmail.com writes: Hi Rainer, I have not tested the patch (I rarely use :var), but here are some comments from reading the patch. 2014ko ekainak 19an, Rainer M Krug-ek idatzi zuen: Hi This patch should fix the problem of tangling with variable transfer of tables

Re: [O] [PATCH] -for review- Tangling with variable transfer of variables

2014-06-20 Thread Rainer M Krug
`file' dumped into it, which might be an annoyance. Not only annoyance - can cause overwriting of the data. Will look into this. Thanks a lot, Rainer HTH, Chuck -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre

Re: [O] [PATCH] -for review- Tangling with variable transfer of variables

2014-06-20 Thread Rainer M Krug
Attached please find =the reworked patch. 1) uses local() and closes connection 2) does not leave a variable cal;led file behind Cheers, Rainer From 2989c5890736099521a077d3b15d2ccc37c88b67 Mon Sep 17 00:00:00 2001 From: Rainer M. Krug r.m.k...@gmail.com Date: Fri, 20 Jun 2014 22:19:59 +0200

[O] [PATCH] -for review- Tangling with variable transfer of variables

2014-06-19 Thread Rainer M Krug
f77e982e17909f2098974356c304bd29db04da79 Mon Sep 17 00:00:00 2001 From: Rainer M. Krug r.m.k...@gmail.com Date: Thu, 19 Jun 2014 22:03:46 +0200 Subject: [PATCH] lisp/ob-R.el: Fix tangling with tables * lisp/ob-R.el (org-babel-R-assign-elisp): Fix variable transfer of tables by using text connections

Re: [O] Tangling with variables in R

2014-06-16 Thread Rainer M Krug
Andreas Leha andreas.l...@med.uni-goettingen.de writes: Hi Rainer, Hi Andreas, Rainer M Krug rai...@krugs.de writes: Hi I just realized (again) that tangling with variables in R contains many particularities. 1) it only works with non-tables, i.e. single values. When defining

Re: [O] [BUG] [babel] in :eval never with :session

2014-06-10 Thread Rainer M Krug
Eric Schulte schulte.e...@gmail.com writes: Rainer M Krug rai...@krugs.de writes: Charles Berry ccbe...@ucsd.edu writes: Eric Schulte schulte.eric at gmail.com writes: Rainer M Krug Rainer at krugs.de writes: The error is back: You say back, was this error not present recently

[O] Permission denied Error from git upon update

2014-06-10 Thread Rainer M Krug
update ` presumably because I have two remotes defined, , | $ git remote | github | origin ` Any suggestions how I could make it work again? Thanks, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre

[O] Sauron and Org-mode

2014-06-07 Thread Doyley, Marvin M.
I go this to work. It turns out that it works only for appointments not deadlines or schedule. Cheers, M

Re: [O] Fwd: Emphasizing multiple lines

2014-06-05 Thread Doyley, Marvin M.
this is only cosmetic, I will work with the default values. Thanks, M

[O] Fwd: Emphasizing multiple lines

2014-06-04 Thread Doyley, Marvin M.
. The only snag is that I have to refill the paragraph to get it to work. Is there a way around this ? cheers, M

Re: [O] Remove the build-in orgmode

2014-06-02 Thread Rainer M Krug
Brady Trainor algeb...@uw.edu writes: Shiyuan wrote: Hi, I updated Org-mode from ELPA. If I start emacs normally, M-x org-version does show the new version(8.2.6). But if I start emacs with -Q, emacs will still run the built-in version(7.9.3). This is not convenient for debugging

[O] Tangling with variables in R

2014-06-02 Thread Rainer M Krug
/org_functions.R -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South Africa Tel : +33 - (0)9 53 10 27 44 Cell: +33 - (0)6 85 62 59 98 Fax : +33 - (0)9 58 10 27

Re: [O] Writing .el files for org in org?

2014-06-02 Thread Rainer M Krug
, Bastien b...@gnu.org wrote: Rainer M Krug rai...@krugs.de writes: So the reason why I think it would be advantageous to have these files in org does not lie with the programmer familiar with emacs-lisp, but with somebody familiar with the other side. Sorry I was too terse in my previous

Re: [O] getting directory of org installation in elisp

2014-05-30 Thread Rainer M Krug
Bastien b...@gnu.org writes: Hi Rainer, Hi Bastien, Rainer M Krug rai...@krugs.de writes: And I want to load this R code into R, controlled from org. Ok, I understand now -- then yes, you can use the etc/ directory for R code that will be loaded. But please anticipate that this new

Re: [O] Adding source location information when tangling

2014-05-29 Thread Rainer M Krug
Envoyé de mon iPhone Le 28 mai 2014 à 23:48, Thomas Morgan t...@ziiuu.com a écrit : Hi, Rainer, Rainer M Krug r.m.k...@gmail.com writes: Envoyé de mon iPhone Le 25 mai 2014 à 18:28, Thomas Morgan t...@ziiuu.com a écrit : Dear Org hackers, I have a question about tangling

[O] Interesting way to send notifications from emacs (OSX)

2014-05-27 Thread Rainer M Krug
Hi Just found this blogpost [1] on how to send notifications from emacs without growl - might be useful for reminders and longer running computations in babel? Cheers, Rainer Footnotes: [1] http://justinsboringpage.blogspot.fr/2014/05/sending-notifications-from-emacs.html -- Rainer M

Re: [O] Folding in iESS R buffer

2014-05-27 Thread Rainer M Krug
Thorsten Jolitz tjol...@gmail.com writes: Rainer M Krug rai...@krugs.de writes: Hi Rainer, sorry for the late reply, I was offline some time. No problem. I have modified the variable transfer in ob-R.el so that the variable transfer code is enclosed as can be seen below. My idea

Re: [O] Folding in iESS R buffer

2014-05-27 Thread Rainer M Krug
Rainer M Krug rai...@krugs.de writes: Thorsten Jolitz tjol...@gmail.com writes: Rainer M Krug rai...@krugs.de writes: Hi Rainer, sorry for the late reply, I was offline some time. No problem. I have modified the variable transfer in ob-R.el so that the variable transfer code

Re: [O] Writing .el files for org in org?

2014-05-27 Thread Rainer M Krug
Hi Thorsten Thorsten Jolitz tjol...@gmail.com writes: Rainer M Krug rai...@krugs.de writes: Hi Rainer, But as I am struggling with elisp, I would like to put the ob-R.el file into an org file which is then tangled into the ob-R.el file. again, this is the main use case for outshine

Re: [O] Folding in iESS R buffer

2014-05-27 Thread Rainer M Krug
Thorsten Jolitz tjol...@gmail.com writes: Rainer M Krug rai...@krugs.de writes: Rainer M Krug rai...@krugs.de writes: Thorsten Jolitz tjol...@gmail.com writes: Rainer M Krug rai...@krugs.de writes: Hi Rainer, sorry for the late reply, I was offline some time. No problem. I have

Re: [O] Adding source location information when tangling

2014-05-27 Thread Rainer M Krug
Envoyé de mon iPhone Le 25 mai 2014 à 18:28, Thomas Morgan t...@ziiuu.com a écrit : Dear Org hackers, I have a question about tangling LilyPond code blocks. Is there a way to put the commands `\sourcefilename' and `\sourcefileline' in the tangled file before each block, perhaps in

Re: [O] Writing .el files for org in org?

2014-05-23 Thread Rainer M Krug
Bastien b...@gnu.org writes: Rainer M Krug rai...@krugs.de writes: But as I am not the one who has to maintain it, it is easy for me to suggest it. :) Even if we find a solution for keeping everything in sync easily, there is still the problem of enforcing a convention on potentially

[O] getting directory of org installation in elisp

2014-05-23 Thread Rainer M Krug
) How can I get the ORGDIR under elisp, so that I can use it to load From ORGDIR/R/*.R ? Thanks, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South Africa Tel

Re: [O] getting directory of org installation in elisp

2014-05-23 Thread Rainer M Krug
Bastien b...@gnu.org writes: Hi Rainer, Rainer M Krug rai...@krugs.de writes: I want to load some R code into org when using R with org (i.e. in ob-R.el) which would be part of org mode. Therefore I have two questions: I'm not sure I understand: why do you need to put R code

Re: [O] Writing .el files for org in org?

2014-05-22 Thread Rainer M Krug
://github.com/rkrug/ess-dev -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South Africa Tel : +33 - (0)9 53 10 27 44 Cell: +33 - (0)6 85 62 59 98 Fax : +33

Re: [O] Writing .el files for org in org?

2014-05-22 Thread Rainer M Krug
Grant Rettke g...@wisdomandwonder.com writes: On Wed, May 21, 2014 at 3:21 PM, Rainer M Krug rai...@krugs.de wrote: I am sure this would be possible, but would this be feasible? A good idea? Or would it be better to have an additional directory (e.g. lisp.org) which contains the corresponding

Re: [O] Writing .el files for org in org?

2014-05-22 Thread Rainer M Krug
instead of org.texi -- I mean, I'd be glad to be able to edit the manual as org.org, but having a preliminary export step before importing org.texi into Emacs might create problems. -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre

Re: [O] Writing .el files for org in org?

2014-05-22 Thread Rainer M Krug
Bastien b...@gnu.org writes: Rainer M Krug rai...@krugs.de writes: So I would argue that in ob-LANGUAGE.el files the non-elisp-expert is more likely to look and work then in the core org files wherefore an a more familiar interface for these changes (literate programming in org) would

Re: [O] Writing .el files for org in org?

2014-05-22 Thread Rainer M Krug
Bastien b...@gnu.org writes: Rainer M Krug rai...@krugs.de writes: So the reason why I think it would be advantageous to have these files in org does not lie with the programmer familiar with emacs-lisp, but with somebody familiar with the other side. Sorry I was too terse in my previous

Re: [O] Writing .el files for org in org?

2014-05-22 Thread Rainer M Krug
Josh Berry tae...@gmail.com writes: On Thu, May 22, 2014 at 5:54 AM, Rainer M Krug rai...@krugs.de wrote: 4) and if it is working, detangled into ob-org Apologies for jumping in as a lurker. When you say detangled, is there a process for doing this? I know that working with cweb

[O] Writing .el files for org in org?

2014-05-21 Thread Rainer M Krug
usage, I am going to use it, but it might be useful to have this for all supported languages? Cheers, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South Africa

Re: [O] Can I create an agenda sorted manually keeping its order at refresh?

2014-05-21 Thread M
Von: Samuel Wales samolog...@gmail.com Datum: Tue, 20 May 2014 13:49:51 -0700 you can use, for example, priorities to indicate the order you want, and then refresh the agenda. Hi Samuel, thanks for your comment! I do use priorities already, but they have a special meaning and can not be

Re: [O] Can I create an agenda sorted manually keeping its order at refresh?

2014-05-21 Thread M
Von: Bastien b...@gnu.org Datum: Tue, 20 May 2014 18:14:28 +0200 I'd like to create an agenda view which is sorted manually so that I can put the things on the agenda in the order like I want to act on them and preserve this order even if the agenda is rebuilt or closed and created again.

[O] org-mode fontification error with newest git

2014-05-16 Thread Rainer M Krug
Hi I get an org-mode fontification error for R when using the newest org From git. I have set (setq org-src-fontify-natively t) Unfortunately, I do not manage to get a backtrace. Cheers, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl

[O] solved: org-mode fontification error with newest git

2014-05-16 Thread Rainer M Krug
Sorry for the noise - working. Was caused by inconsistent compilation of org and ess. Cheers, Rainer Rainer M Krug rai...@krugs.de writes: Hi I get an org-mode fontification error for R when using the newest org From git. I have set (setq org-src-fontify-natively t) Unfortunately

[O] Update of git repo does not work?

2014-05-13 Thread Rainer M Krug
Is there a problem with git? I can't update via git: , | $ git remote -v | origingit://orgmode.org/org-mode.git (fetch) | origingit://orgmode.org/org-mode.git (push) | $ git pull | fatal: read error: Connection reset by peer | $ make update | rm -f | git checkout | M etc/R

Re: [O] [babel][PATCHES] ob-R patches for review

2014-05-12 Thread Rainer M Krug
Eric Schulte schulte.e...@gmail.com writes: Rainer M Krug rai...@krugs.de writes: Bastien b...@gnu.org writes: Hi Rainer, Rainer M Krug r.m.k...@gmail.com writes: I'll look at it again tomorrow and let you know as I made some changes since then. Do you prefer one patch to several? Up

Re: [O] [babel][PATCHES] ob-R patches for review

2014-05-12 Thread Rainer M Krug
Suvayu Ali fatkasuvayu+li...@gmail.com writes: On Mon, May 12, 2014 at 10:33:48AM +0200, Rainer M Krug wrote: Eric Schulte schulte.e...@gmail.com writes: Rainer M Krug rai...@krugs.de writes: Bastien b...@gnu.org writes: Hi Rainer, Rainer M Krug r.m.k...@gmail.com writes

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