Re: [EXT] Problem with org-ref

thanks for the troubleshooting. I pushed a fix that should use the customizable pdf filename function instead. John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803

Re: [EXT] Problem with org-ref

HI Kyle, This solved my problems Thanks, M > On Mar 9, 2021, at 11:49 PM, Kyle Meyer wrote: > > Marvin M. Doyley writes: > >> Hi there, >> >> When I use crossref-add-bibtex-entry it download the BibTeX entry but cannot >> download the associated pdf. >> I get the following error

Re: Problem with org-ref

Marvin M. Doyley writes: > Hi there, > > When I use crossref-add-bibtex-entry it download the BibTeX entry but cannot > download the associated pdf. > I get the following error (wrong-type-argument stringp > ("/Users/doyley/Dropbox/Filing_Cabinet/B/refs/pdf/“)) > > I configured org-ref as

Problem with org-ref

Hi there, When I use crossref-add-bibtex-entry it download the BibTeX entry but cannot download the associated pdf. I get the following error (wrong-type-argument stringp ("/Users/doyley/Dropbox/Filing_Cabinet/B/refs/pdf/“)) I configured org-ref as follows (setq org-ref-bibliography-notes

Re: problem with org-ref

This means the biblio package is not installed for some reason. John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu On

problem with org-ref

Hi! After having upgraded my packages I can activate org-ref anymore. (require 'org-ref) results in the error message: File error: Cannot open load file, No such file or directory, biblio Any hints what is going wrong? I am using org-ref-20200710.1516 Aquamacs 3.5 GNU Emacs 25.3.50.1

Re: [O] problem with org-ref after upgrading org-mode from 8.3 to 9.0.5

The problem was a corrupted let-plist package in my elpa folder. After reinstalling the package all works fine. Johannes Am 03.04.2017 um 20:05 schrieb John Kitchin >: That looks like an issue with helm-Bibtex. You might try updating it

Re: [O] problem with org-ref after upgrading org-mode from 8.3 to 9.0.5

That looks like an issue with helm-Bibtex. You might try updating it and/or raise an issue with that package. On Mon, Apr 3, 2017 at 11:03 AM Johannes Brauer wrote: > that’s what I get executing (require 'org-ref): > > Debugger entered--Lisp error: (error "Required

Re: [O] problem with org-ref after upgrading org-mode from 8.3 to 9.0.5

that’s what I get executing (require 'org-ref): Debugger entered--Lisp error: (error "Required feature ‘let-alist’ was not provided") require(let-alist) byte-code("\300\301!\210\300\302!\210\300\303!\210\300\304!\210\300\305!\210\300\306!\210\300\307!\210\300\310!\210\300\311!\207"

Re: [O] problem with org-ref after upgrading org-mode from 8.3 to 9.0.5

I have not seen that before. Was there a traceback that indicated where the error came from? Johannes Brauer writes: > Hi, > after the upgrade (require 'org-ref) results in the error message: > (error "Required feature ‘let-alist’ was not provided“) > > I am using Aquamacs 3.3 GNU Emacs

[O] problem with org-ref after upgrading org-mode from 8.3 to 9.0.5

Hi, after the upgrade (require 'org-ref) results in the error message: (error "Required feature ‘let-alist’ was not provided“) I am using Aquamacs 3.3 GNU Emacs 25.1.1. I looked for let-plist using list-packages and found: let-alist 1.0.4 built-in What is going wrong?

Re: [O] HTML Export problem with org-ref -- SOLVED

On 10/02/17 10:23, Alan L Tyree wrote: I'm trying to export a large document (about 600 printed a4 pages) to html. It contains a lot of references. The export fails with this message: byte-code: abl-8 chicago limit:t does not seem to exist Because of the "chicago", I am presuming that the

Re: [O] HTML Export problem with org-ref

On 10/02/17 10:23, Alan L Tyree wrote: I'm trying to export a large document (about 600 printed a4 pages) to html. It contains a lot of references. The export fails with this message: byte-code: abl-8 chicago limit:t does not seem to exist Because of the "chicago", I am presuming that the

[O] HTML Export problem with org-ref

I'm trying to export a large document (about 600 printed a4 pages) to html. It contains a lot of references. The export fails with this message: byte-code: abl-8 chicago limit:t does not seem to exist Because of the "chicago", I am presuming that the failure is in my setup of org-ref, but I

Re: [O] Problem with org-ref

What about the value of org-ref-pdf-directory. This seems to be where your error is coming from. Your debugger info suggests it is set to nil. Debugger entered--Lisp error: (wrong-type-argument stringp nil) file-name-as-directory(nil) org-ref-open-bibtex-notes()

Re: [O] Problem with org-ref

Thanks John. Yes, that was the case, because I had no intention of downloading the pdfs. So I had set (setq doi-utils-download-pdf nil) and left org-ref-pdf-directory nil. Setting it to a valid directory gets rid of the error. Thanks. I would find it useful (given that I've disabled

Re: [O] Problem with org-ref

Magic! Thanks a lot, John. On 26 December 2015 at 12:06, John Kitchin wrote: > That sounds ok. I pushed a change that sort of does what you ask for. If > the "calculated" pdf doesn't exist then you should get prompted for a pdf, > and pressing enter for the default (no

Re: [O] Problem with org-ref

That sounds ok. I pushed a change that sort of does what you ask for. If the "calculated" pdf doesn't exist then you should get prompted for a pdf, and pressing enter for the default (no pdf) should not add a pdf link. John --- Professor John Kitchin Doherty Hall

Re: [O] Problem with org-ref

That is an odd looking path. On Mac that would expand to something like /Users/Dropbox/_biblio/org-ref/bibnotes.org and on linux /home/Dropbox/_biblio/org-ref/bibnotes.org usually you should not have permission for that, and neither make sense to me. Does (file-exists-p

Re: [O] Problem with org-ref

I've set the HOME environment variable to "C:/Users/andre_000/Documents" and hence need the .. to get into the Dropbox folder. Executing (find-file org-ref-bibliography-notes) does find and open the correct notes file. Using an absolute path, as in: (setq org-ref-bibliography-notes

Re: [O] Problem with org-ref

Hi John, I've set it at follows (based on your setup) in my init.el file: (setq org-ref-bibliography-notes "~/../Dropbox/_biblio/org-ref/bibnotes.org" org-ref-default-bibliography '("~/../Dropbox/_biblio/refs.bib")) So, non-nil. Andreas​ On 25 December 2015 at 00:45, John Kitchin

Re: [O] Problem with org-ref

On Thu, Dec 24, 2015 at 1:04 AM, Andreas Kiermeier < andreas.kierme...@gmail.com> wrote: > org-ref-open-bibtex-notes() That looks like a different error that occurs in org-ref-open-bibtex-notes(). Up to that point everything looks normal. What do you have your org-ref-bibliography-notes

Re: [O] Problem with org-ref

Hi John,I am using a Mac too, and pdftotext seem to be working, well for an ocr file (see below) if I run pdftotext on the original pdf I get nothing.cheers,MPS I am using brew poppler, which includes pdftotext On Dec 23, 2015, at 4:30 PM, John Kitchin wrote:Thanks! Do

Re: [O] Problem with org-ref

Hi John, similar doi problem here. My configuration is: - Windows 10 - GNU Emacs 24.5.1 (i686-pc-mingw32) of 2015-04-11 on LEG570 - Miktex (up-to-date) with pdftotext v0.32..0 - org-ref v 0.5.0 (from melpa) Running pdftotext from the command line works and produces a text file with

Re: [O] Problem with org-ref

I tested part of this on Windows in a git bash shell: $ pdftotext -v pdftotext version 0.14.5 Copyright 2005-2010 The Poppler Developers - http://poppler.freedesktop.org Copyright 1996-2004 Glyph & Cog, LLC and then this works: $ pdftotext.exe kitchin-2015-examp.pdf - | grep DOI ACS Catal., Just

Re: [O] Problem with org-ref

Hi John, Its now working, it turns out the version of pdftotext that I was using wasn’t working well. I found different version (http://macappstore.org/pdftotext/ ) that did the trick cheers, M > On Dec 23, 2015, at 4:30 PM, John Kitchin

Re: [O] Problem with org-ref

Thanks! Do you know if you have pdftotext working on your machine? The pdf drag-n-drop works by converting the pdf to text, and than matching a pattern to find a doi. If none is found, you get the message you noted. The url dnd works similarly, but there are a bunch of recipes for what to match

[O] Problem with org-ref

Hi John, I am playing with org-ref, the melpa version. Everything works fine except, one thing. When I drag a pdf to an empty bibtex file it doesn’t extract the doi ( no doi found in the file:/// ). I tried it pdf you used in your video (Examples of Effective Data Sharing in

Re: [O] Problem with org-ref

Hi John, thanks for the quick feedback and fix. Yes, the version that comes with GitHub (on Windows) works when set this way, though I had to specify slightly differently (i.e quotes & backslashes): (setq pdftotext-executable