[EMAIL PROTECTED] <[EMAIL PROTECTED]> said:
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> I actually reinstalled Bioperl but I have just tried to rebuild...still
> getting:
>
> Can't locate Bio/DB/GenBank.pm in @INC (
I actually reinstalled Bioperl but I have just tried to rebuild...still getting:
Can't locate Bio/DB/GenBank.pm in @INC (@INC contains: /sw/lib ...
or
Can't locate Bio/Seq.pm in @INC (@INC contains: /sw/lib ...
ETC... I should have done something incorrectly that would explain those .pm
are not
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Yeah. If you edit /sw/etc/apt/sources.list as root, you can add lines
corresponding to your old fink tree:
deb file:/sw.old/fink stable main crypto
deb file:/sw.old/fink unstable main crypto
Replace sw.old with the actual name of your former tree,
Original Message
Subject: Re: [Fink-beginners] No fonts after Leopard upgrade
Date: Wed, 31 Oct 2007 13:59:17 -0400
From: Alexander K. Hansen <[EMAIL PROTECTED]>
To: salvo mac <[EMAIL PROTECTED]>
References:
<[EMAIL PROTECTED]>
<[EMAIL PROTECTED]>
<[EMAIL PRO
Original Message
Subject:Re: [Fink-beginners] No fonts after Leopard upgrade
Date: Wed, 31 Oct 2007 18:55:52 +0100
From: salvo mac <[EMAIL PROTECTED]>
To: Alexander K. Hansen <[EMAIL PROTECTED]>
References:
<[EMAIL PROTECTED]>
<[EMAIL PROTECTED]>
<[EMAIL PROTECTE
OK. Done that... :-)
Can I rescue the packages and applications I had already built on
Tiger, or do I start again?
-Ross-
On Oct 31, 2007, at 11:21 AM, Alexander K. Hansen wrote:
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> Ah, I forgot what your _real_ problem was. 10.3 -> 10.5 do
Keeping the trail going
Original Message
Subject: Re: [Fink-beginners] No fonts after Leopard upgrade
Date: Wed, 31 Oct 2007 13:20:42 -0400
From: Alexander K. Hansen <[EMAIL PROTECTED]>
To: salvo mac <[EMAIL PROTECTED]>
References:
<[EMAIL PROTECTED]>
<[EMAIL
Let's keep a "paper trail" on the list.
Original Message
Subject:Re: [Fink-beginners] No fonts after Leopard upgrade
Date: Wed, 31 Oct 2007 18:15:41 +0100
From: salvo mac <[EMAIL PROTECTED]>
To: Alexander K. Hansen <[EMAIL PROTECTED]>
References:
<[EMAIL PROTECTED
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salvo mac wrote:
> Hi,
> I've upgraded a computer that already had Fink to Leopard. I've then
> upgraded also Fink (0.27.7).
> Now if I try something (that seems to be installed) like gcalctool or
> kcalc I get this message:
>
> "Fontconfig error: C
Hi Jean-luc,
Have you rebuilt bioperl-pm586 since your OS upgrade? Perhaps that
will sort things out. (fink rebuild bioperl-pm586)
Keep us posted,
Robert
Jean-luc Jany wrote:
> My Fink is now the correct version (0.27.7) and it worked in installing
> other packages, but the problem with Bioper
My Fink is now the correct version (0.27.7) and it worked in installing
other packages, but the problem with Bioperl persists. According to you
is it due to the bioperl package version (that means that I should wait
for a pm588) or rather to another problem?
Thanks in anticipation.
jlj
---
Hi Jean-luc,
You are correct that bioperl-pm588 doesn't exist in the fink package
database right now; perhaps it will soon.
However I'm not sure that you have the current fink if your version
still says 0.27.3 (it should be 0.27.7).
--Robert
Jean-luc Jany wrote:
> Thank you for your help, it is
Hi,
I've upgraded a computer that already had Fink to Leopard. I've then
upgraded also Fink (0.27.7).
Now if I try something (that seems to be installed) like gcalctool or
kcalc I get this message:
"Fontconfig error: Cannot load default config file
No fonts found; this probably means that the
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Ah, I forgot what your _real_ problem was. 10.3 -> 10.5 doesn't work yet.
I would recommend a bootstrap, i.e. move /sw out of the way. You can
recycle your .deb files after you get going.
Phillip R Smith wrote:
> OK. Following the instructions in
OK. Following the instructions in the article I removed 10.5 and the
folders below it.
This seems not to have move me forwards...
I now see ...
mcrc13-6> rmdir 10.5
mcrc13-7> fink reinstall fink
Scanning package description files
not a reference at /sw/lib/perl5/Fink/Services.pm line 1910
I t
Thank you for your help, it is very much appreciated. I did the update
and I have got the 0.27.3 version now. Unfortunately I had a look at the
Fink website regarding the bioperl-pm588 package but was unable to
retrieve it. There is only a bioperl-pm586 package available as source
that is menti
On Oct 31, 2007, at 9:12 AM, Jean-luc Jany wrote:
> Dear Fink users and developers,
>
> I started very recently to use my Mac Terminal and I am still not very
> good when it comes to use line codes. However, I was able to write
> simple scripts by using the Bioperl module installed via Fink on my
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Someone on fink-devel had an identical problem:
http://article.gmane.org/gmane.os.macosx.fink.devel/15068
Basically if /sw/fink/10.5 already exists, the 10.5 -> 10.4 symbolic
link doesn't work right.
Phillip R Smith wrote:
> mcrc13-4> ls -l /sw/fin
On 31/10/2007, Daniel Johnson <[EMAIL PROTECTED]> wrote:
> > ...
>
> I can't duplicate this with any site, using both Leopard's curl 7.16.3
> or fink's curl 7.17.1. All DNS lookups are virtually instantaneous.
> Perhaps there's an issue with your DNS servers?
My experiments show the following:
W
Dear Fink users and developers,
I started very recently to use my Mac Terminal and I am still not very
good when it comes to use line codes. However, I was able to write
simple scripts by using the Bioperl module installed via Fink on my OsX
Tiger.
I have recently upgraded my OSX to Leopard (
mcrc13-4> ls -l /sw/fink/10.5
total 8
lrwxr-xr-x 1 root admin4 Oct 30 11:06 10.4 -> 10.4
drwxr-xr-x 4 smithp01 admin 136 Oct 30 09:19 local
This is a G5 with an upgrade to Leopard and a successful install of
the devtools.
-Ross-
On Oct 30, 2007, at 3:52 PM, David R. Morrison wro
On Oct 31, 2007, at 5:57 AM, Chris Jefferson wrote:
In reply to this earlier message, I believe there is a DNS-related
issue which is effecting a number of programs. The two I have found
are curl and adium's MSN support.
The easiest way to diagnose this problem is to run 'time curl
http://goog
In reply to this earlier message, I believe there is a DNS-related
issue which is effecting a number of programs. The two I have found
are curl and adium's MSN support.
The easiest way to diagnose this problem is to run 'time curl
http://google.com' (or other favourite website. I find I always get
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