Re: [Freesurfer] license

2005-11-07 Thread Bruce Fischl
no, it's usually right away. I'll check. Bruce On Mon, 7 Nov 2005, Roberto Toro wrote: Hi, I asked (twice, using [EMAIL PROTECTED]) for a license to use freesurfer the last week and haven't had any answer is this delay normal? thanks in advance! roberto This message has been checked

Re: [Freesurfer] make_average_surface error

2005-11-07 Thread Doug Greve
Looks like MRISwriteCurvature failed. Can you make sure that average/surf/ exists and is writable, and if there is a lh.avg_sulc there that you have perms to overwrite it? doug Jane Aspell wrote: Hi I have been trying to run make_average_surface but get the error below. Any idea what

Re: [Freesurfer] make_average_surface error

2005-11-07 Thread Bruce Fischl
also, what is you SUBJECTS_DIR set to? On Mon, 7 Nov 2005, Doug Greve wrote: Looks like MRISwriteCurvature failed. Can you make sure that average/surf/ exists and is writable, and if there is a lh.avg_sulc there that you have perms to overwrite it? doug Jane Aspell wrote: Hi I have

[Freesurfer] Control points

2005-11-07 Thread Fornito, Alexander
Hi, I was just after some more pointers on using control points. Some gyri are missed in some of my images, and using control points recovers them, but it also tends to make the wm surface eat into the grey matter in some regions. Just wandering if there's anyway to prevent this from happening?

[Freesurfer] keeping wm edits

2005-11-07 Thread Don Hagler
When I run recon-all with the -autorecon2-wm flag, my white matter edits get overwritten, presumably by aseg, even if I use the -keepwmedits flag. Is that the correct behavior or is this a bug? If instead of -autorecon2-wm I use -stage2, then the wm is untouched (as desired). For some

Re: [Freesurfer] keeping wm edits

2005-11-07 Thread Doug Greve
what version of recon-all do you have? Don Hagler wrote: When I run recon-all with the -autorecon2-wm flag, my white matter edits get overwritten, presumably by aseg, even if I use the -keepwmedits flag. Is that the correct behavior or is this a bug? If instead of -autorecon2-wm I use

[Freesurfer] Re: parcellating primate brain

2005-11-07 Thread Mark Pinsk
I remember Oleg Gusyatin posted some time ago about wanting to make a macaque parcellation.Just wondering if that was ever done, and if so, would it be accessible to users by any chance :) ?I know I can use Caret, but we're all using freesurfer for human data here so I was just wondering. thx-

Re: [Freesurfer] Re: parcellating primate brain

2005-11-07 Thread Bruce Fischl
no idea (Oleg?). I do know that we can interchange data pretty well with Caret though (thanks mainly to David Van Essen's work, not ours :). Bruce On Mon, 7 Nov 2005, Mark Pinsk wrote: I remember Oleg Gusyatin posted some time ago about wanting to make a macaque parcellation. Just wondering

Re: [Freesurfer] license

2005-11-07 Thread Nick Schmansky
Roberto, Did you apply for the license via this form? see: http://surfer.nmr.mgh.harvard.edu/registration.html Once this is filled-out, and the 'I Agree' button is clicked, it should instantly email you a license file. Currently, it seems to be working for others. Perhaps your email