Re: [Freesurfer] freesurfer on windows thru ssh

you can use VNC to do it (we use Ultra VNC Viewer locally). Works quite nicely. cheers, Bruce On Fri, 9 Jun 2006, Gifford, Sheyna wrote: Dear Freesurfer Community, Freesurfer is running well on Mac OSX and BSD, but one of my users wants to run it on Windows thru ssh. This is the error that

[Freesurfer] freesurfer on windows thru ssh

Dear Freesurfer Community, Freesurfer is running well on Mac OSX and BSD, but one of my users wants to run it on Windows thru ssh. This is the error that is generated when she tries. >GLUT: Fatal Error in tkmedit: OpenGL GLX extension not supported by >display: localhost:14. I am not at all a

Re: [Freesurfer] SPM conversion to FreeSurfer-style reg matrix

mri_convert brain.mgz brain.img Avram Holmes wrote: Hi, While we are on the format conversion topic. I am trying to convert an FreeSurfer fomat structural into analyze format .img/.hdr file. This is following the freesurfer skullstrip and tkmedit steps. Thanks, Avram

Re: [Freesurfer] SPM conversion to FreeSurfer-style reg matrix

mri_convert .mgz .img should do it Bruce On Fri, 9 Jun 2006, Avram Holmes wrote: Hi, While we are on the format conversion topic. I am trying to convert an FreeSurfer fomat structural into analyze format .img/.hdr file. This is following the freesurfer skullstrip and tkmedit steps. Thanks, A

Re: [Freesurfer] SPM conversion to FreeSurfer-style reg matrix

Hi, While we are on the format conversion topic. I am trying to convert an FreeSurfer fomat structural into analyze format .img/.hdr file. This is following the freesurfer skullstrip and tkmedit steps. Thanks, Avram Avram Holmes Department

Re: [Freesurfer] SPM conversion to FreeSurfer-style reg matrix

tkregister2 --mov yourspm.img --s yoursubject --reg register.dat --regheader yourspm.img should have a matlab4 yourspm.mat file There also a cmd-line program called spmregister, which you can run something like: spmregister --mov yourspm.img --s yoursubject --reg register.dat doug jswonde

[Freesurfer] SPM conversion to FreeSurfer-style reg matrix

Hello all, I am looking for a way to convert an SPM .mat to a FreeSurfer registration matrix (register.dat); basically, something like the old spmmat2register command, but not obsolete...any suggestions? Thanks! ___ Freesurfer mailing list Freesurfer@nm

Re: [Freesurfer] center of pial surface in world coordinates

Where is neurolens getting it's coords? There will be a shift in the surf coords. relative to the orig.mgz. If you run mri_info orig.mgz you will see c_{ras} values. Try adding or subtracting these. doug martijn van den heuvel wrote: Hi Doug, Thanks for your reply. Indeed, I can ope

[Freesurfer] Re: group analysis error

never mind...figured out. thx --- adam walczak <[EMAIL PROTECTED]> wrote: > Hello, > > While running group analysis (mri_glmfit step), on > an > admittedly tiny subject group (3). I used two > classes > (male/female) and age. I received the following > error: > > ERROR: DOF = 0 > > I am won

[Freesurfer] group analysis error

Hello, While running group analysis (mri_glmfit step), on an admittedly tiny subject group (3). I used two classes (male/female) and age. I received the following error: ERROR: DOF = 0 I am wondering if three subjects is too small a data set for this to run or if I am just doing something wron