Re: [Freesurfer] Mapping segmentation to orig

2007-09-23 Thread Bruce Fischl
Hi Martin, you can do this with mri_convert using -rl $SUBJECT_ID/mri/orig/001.mgz (reslice like this volume) and -rt nearest (resample type nearest neighbor) I think. Check the help if this is wrong. It will need to resample though. cheers, Bruce On Sun, 23 Sep 2007, Martin Kavec wrote:

[Freesurfer] mean thickness difference maps

2007-09-23 Thread Kirk, Gregory
Hi All, I wanted to clarify a point. Publications of cortical thickness differences are usually produced with maps called mean thickness difference maps. I dug through the mail archive but did not find an answer (Q1) These statistical parametric maps are I assume produced by computing a mri_gl

[Freesurfer] Mapping segmentation to orig

2007-09-23 Thread Martin Kavec
Hi, how can I map the aparc+aseg.mgz back to $SUBJECT_ID/mri/orig/001.mgz, but without suffering from interpolation? Thanks, Martin ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer