I'm sure Bruce has much more experience on the subject than me. Also I'm not
part of Martinos development team. I'll just add my personal experience:
1) Your running times seens very high. I never saw 72 hours in my studies.
Notice that Itanium (and Itanium 2) cpu are far distinct than x86
one correction: FS does have Itanium version.
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer-Linux-suse-ia64-stable-pub-v4.0.1-full.tar.gz
So my guess for item (1) is check if all code running is for IA64 architecture.
-Original Message-
From: [EMAIL PROTECTED] [mailto:[EMAIL
Hi Bruce,
Thanks for your answers. I am not sure how much more ram might be needed
dependant on anatomy but my last job failed due to FS using more than 3 Gig
PBS: job killed: per node vmem 34078384kb exceeded limit 2097152kb
or does it suggest there is a problem with our configuration?
do you know what process it was running when it failed? You could use
-autorecon2-cp and -autorecon3. Something else seems like it is wrong
though - you shouldn't need 3G of ram.
On Tue, 13 Nov 2007, Nicolas Cherbuin
wrote:
Hi Bruce,
Thanks for your answers. I am not sure how much more
another thing you can do is to run it with -debug and capture all of the
terminal output (both stdout and stderr). It will produce huge mounds of
output, but it might be the best way.
doug
Bruce Fischl wrote:
do you know what process it was running when it failed? You could use
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Hi,
I am about to start processing some longitudinal data and am looking for
appropriate software. I know the Freesurfer allows for longitudinal
designs but how appropriate is it to use for developing brains, ie in my
sample the subjects are adolescents between 14-20 and they were last
scanned
