[Freesurfer] Binary Masks

Hello All, I want to create a binary mask volume for stg and tried the following command # mri_label2vol --label trial_labels/rh.superiortemporal.label --temp /mnt/win/MRI_data/Trial_Runs/Freesurfer/1195/mri/brainmask.mgz --o testmask.mgz The label was created using mri_annotation2label When I

Re: [Freesurfer] Binary Masks

Sounds like you should look at the wmparc which includes the cortical labels as well as white matter labels based on proximity to the nearest cortical label. If this works for you, you can create a mask with mri_binarize --i wmparc.mgz --match 2030 --match 4030 --o rh.stg.mask.mgz 2030 and 4

Re: [Freesurfer] Problem make_average_subject

Hi Doug Thanks for the new version of make_average_surface. I tried it but the old error came back again: Allocing output mri_concat(28362) malloc: *** mmap(size=262144) failed (error code=12) *** error: can't allocate region *** set a breakpoint in malloc_error_break to debug MRIalloc(256, 256,