Hi Liat,
have you tried:
https://surfer.nmr.mgh.harvard.edu/fswiki
this is the new wiki page.
cheers,
Bruce
On Tue, 10 Jun 2008, Liat Levita
wrote:
I am sure you are aware of this problem, but since last week we have been
unable to access the FreeSurfer wiki
(http://surfer.nmr.mgh.harvar
Liat,
Could you tell us the browser you are using? Because we have been
using the fswiki without problems. ( and I can access fswiki from my
home, hence we can rule out the case that fswiki is not available
external to our center )
https://surfer.nmr.mgh.harvard.edu/fswiki
and
http://su
Have you looked at the brains? Is the one that takes a week correct, or
does it have cerebellum or skull attached, or some other failure?
cheers,
Bruce
On Tue, 10
Jun 2008, Marlisa Isom wrote:
Hi All,
We have 3 Mac Pros with Leopard which we use to process data (version 4).
Two of them proc
Hi Tricia,
each region grows into the white matter until a prespecified distance
threshold is reached, so it's not quite each gyrus, particularly for the
non-gyral parcellation units. You can visualize them in tkmedit to get a
better idea.
cheers,
Bruce
On Tue, 10 Jun 2008, Tricia Merkley wr
I am sure you are aware of this problem, but since last week we have been
unable to access the FreeSurfer wiki
(http://surfer.nmr.mgh.harvard.edu/docs/index.html). Is it down for
maintenance? and if so when will it be up again?
I have just started using FreeSurfer, hence having major problems w
The algorithm is relatively simple. For each white matter voxel, it
finds the closest surface point. If that point is further than 5 mm
away, then it is labled as "unsegmented white matter". If it is closer,
then it is given the label of the cortical parcellation.
doug
Tricia Merkley wrote:
Hi All,
We have 3 Mac Pros with Leopard which we use to process data (version 4).
Two of them process a brain in 30-36 hours, but one takes a week to
process ONE brain if not more. While the processors are slightly different
(3GHz vs 2.6), not amazingly so. This is seemingly the only difference.
D
Hi,
I just have a quick question regarding the white matter regional volumes as
shown in the wmparc.stats file. How are the white matter regions grown
inward from the cortical parcellation? Does each labeled region include
only the white matter within the specified gyrus, or does it extend fu
Martin,
One thing to try is to make sure that your volumes look ok. There is a
tutorial here:
http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/OutputData
You don't need to download the tutorial data to follow it, just
substitute the subject 'bert' which is distributed in the
freesurfer/subjec
On Monday 09 June 2008 21:57:36 Bruce Fischl wrote:
> I guess it's possible but the -make switch is designed to prevent this. Are
> the surfaces topologically incorrect? What is the euler number for them?
Bruce, this depends on at which point the topology fixing was interrupted. For
this thread I
Petr,
Which freesurfer distribution do you have? type
cat $FREESURFER_HOME/build-stamp.txt
Nick
> autorecon1 with the 4.0.4 version I have the following ERROR (at the end
> of this excerpt):
>
>
> mri_convert ./tmp.mri_nu_corr
Ming,
I'm planning on releasing a new freesurfer v4.0.5 this week, which will
include a distribution for Tiger on Intel.
Nick
On Tue, 2008-06-10 at 02:39 -0500, Ming Hsu wrote:
> Hi, I am getting a qdec error on FreeSurfer 4.0.2 on Tiger. The error has
> been mentioned on the forum before. In
Dear experts!
Have a little problem that hopefully is easy to answer. When running
autorecon1 with the 4.0.4 version I have the following ERROR (at the end
of this excerpt):
mri_convert ./tmp.mri_nu_correct.mni.11745/nu2.mnc nu.mgz
Hi, I am getting a qdec error on FreeSurfer 4.0.2 on Tiger. The error has
been mentioned on the forum before. In particular qdec.bin seems to be
calling for tcl/tk libs in /usr/pubsw which doesn't exist. Below are the
first two lines from the ldd profile for qdec.bin.
> ldd /Applications/frees
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