AW: [Fsdev] Re: [Freesurfer] Talairach Coordinates

Hi, I have the Version 4.0.1. I will download v4.0.5 and try it again... thank you! -Ursprüngliche Nachricht- Von: Nick Schmansky [mailto:[EMAIL PROTECTED] Gesendet: Di 22.07.2008 15:58 An: Bruce Fischl Cc: Steinmann, Iris; Freesurfer Mailing List Betreff: Re: [Fsdev] Re: [Freesurfer]

[Freesurfer] Vertex information lookup

Dear list, I wish to obtain information about a list of surface vertices, including their coordinates in MNI305 and Talairach spaces. Is there any tool that can provide this information at the command line? I can get the information by loading tksurfer and selecting the vertex, but this is

[Freesurfer] qdec ERROR: Rendering vtkXOpenGLRenderWindow

Hi, Running Freesurfer v405 on RHEL5. Tried to launch qdec from the command prompt. While the splash screen did appear with the inflated brain surface, the qdec interface did not appear (even after 10min). When I tried to CTRL-C the terminal window, the following error message appeared: [EMAIL

[Freesurfer] tkmedit problem with XQuartz-2.3.0

Hi, On my macbook pro (MAC OS X 10.5) I have recently updated my X to 2.3.0 and now I can not launch tkmedit: $ tkmedit $SUBJ brainmask.mgz rh.white -aux-surface lh.white Converting main surface: 100% done. Converting main surface: 100% done. Converting original surface: 100%

Re: [Freesurfer] qdec ERROR: Rendering vtkXOpenGLRenderWindow

Jenifer, Is this new to v405, or have prior versions also had this problem? Are you running directly from the terminal? Or over an ssh or vnc connection? If over vnc, from what kind of machine? Nick On Wed, 2008-07-23 at 11:14 -0500, Juranek, Jenifer wrote: Hi, Running Freesurfer v405 on

RE: [Freesurfer] qdec ERROR: Rendering vtkXOpenGLRenderWindow

Hi Nick, This is the first time I have tried to use the qdec feature, so I am unable to report whether new problem to v405 or not. I am running from the terminal window on the RHEL5 box (not across VPN or SSH or VNC). Thanks for any help you can provide, Jenifer -Original Message-

Re: [Freesurfer] tkmedit problem with XQuartz-2.3.0

Martin, From where did the X update originate? tkmedit is known to work on mac os 10.5 using the default X setup. Nick On Wed, 2008-07-23 at 22:43 +0200, Martin Kavec wrote: Hi, On my macbook pro (MAC OS X 10.5) I have recently updated my X to 2.3.0 and now I can not launch tkmedit:

RE: [Freesurfer] qdec ERROR: Rendering vtkXOpenGLRenderWindow

Jenifer, In the file /etc/X11/xorg.conf, within the section titled Section Module, make sure this line exists: Load glx You might need to have your administrator perform this change, as it requires root access. You will have to restart your X server after making this change (Ctrl-Bksp).

Re: [Freesurfer] tkmedit problem with XQuartz-2.3.0

Hi Nick, the update comes from: http://xquartz.macosforge.org/trac/wiki My other X (KDE) applications continue working, and FSL (Tcl/Tk GUI) works fine too. Thanks, Martin On Wednesday 23 July 2008 22:50:01 Nick Schmansky wrote: Martin, From where did the X update originate? tkmedit is

RE: [Freesurfer] qdec ERROR: Rendering vtkXOpenGLRenderWindow

Nick, I checked the /etc/X11/xorg.conf file. It already has a line uder Section Module listing Load glx (see below): # nvidia-settings: X configuration file generated by nvidia-settings # nvidia-settings: version 1.0 ([EMAIL PROTECTED]) Fri Dec 15 10:40:57 P ST 2006 Section ServerLayout