Experts
I am stuck up with a real basic issue, which I have done easily manytimes in
the older version. I have downloaded and installed the stable v4.4.0 version
. I am trying to create a new subject directory, but its throwing the error
cd subjects
barnali-work:/usr/local/freesurfer/subjects> m
Hi,I have been trying to figure out how to get freesurfer to select more of
the grey matter than it does after running recon-all with autorecon2 option.
I feel that there are portions of the grey matter in some of our images
that are not being selected as indicated by the red outline of the pial
m
Hi Freesurfer experts,
I want to do a group ANOVA analysis with one co-variable. I have read the
corresponding wiki but still have some problems. I need your help.
I have 4 group subjects (A1B1, A1B2, A2B1, A2B2) and one co-vaiable (C).
I want to get the interaction between A and B. However, bec
tkmedit should automatically refresh, but make sure that you don't put
it into the background. You can turn on auto redraw in tksurfer from the
View menu. This often slows things down. You can hit the "refresh"
button instead (the button with up and down arrows).
doug
yzha...@artsci.wus
Hi,everyone
I just installed the latest version of freesurfer.
During the testing phase of the install,
when 2 freesurfer windows are open (i.e. tkmedit bert orig.mgz and
tksurfer bert rh pial) the first does not refresh. In fact the active
2nd window must be closed and the first must be refre
Hi Sherri,
they should definitely be compared in the same version and not across
versions. We no longer use the aparc for the cc as it is more accurately
labeled in the aseg
cheers,
Bruce
On Tue, 14 Jul 2009, Sherri Novis wrote:
Hello -
I am comparing aparc stats across several groups of
Hello -
I am comparing aparc stats across several groups of data, and just noticed that
recently processed groups do not have corpus callosum values... which made me
wonder if different versions of freesurfer will produce different aparc data...
Can aparc stats from an older version of freesu
You need an X Server (http://www.straightrunning.com/XmingNotes/) -> I think
this one is free
However, X Server are usually very slow!
---
Pedro Paulo de M. Oliveira Junior
CIO Latam
Netfilter & SpeedComm Telecom
--- New Netfilter 3.0 www.Netf
Hi Dana,
you need something to support the graphics (a local x server). putty ssh
from windows by itself has no graphics.
Bruce
On Tue, 14 Jul 2009, Dana W. Moore
wrote:
I'm not using vnc--just putty ssh. This is my first time using qdec at all.
I have no problem using tkmedit through put
I'm not using vnc--just putty ssh. This is my first time using qdec
at all. I have no problem using tkmedit through putty ssh. I can
try it from the actual machine later today and see if it works, so I
will know if this is what's causing the problem.
At 10:21 AM 7/14/2009, Bruce Fischl wrot
Dear FreeSurfer Community...
1. For QDEC analysis, we have pre-computed smoothed data for the target
fsaverage surface using the command: recon-all -s -qcache.
then we obtained 'lh.thickness.fsaverage.asc ' using mris_convert.
The procedure is here
mris_convert -c ./lh.thickness.fsaverage.mgh \
Hi Rosa
Sorry, this was a bug related to the table producing scripts in a
previous version of FreeSurfer which was fixed subsequently. Get the
files from
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/fsdev/krish/asegaparcutils/datastruct_utils.py
ftp://surfer.nmr.mgh.harvard.edu/transf
I have a Python script to do this.
I don't know how to make this using asegatats2table, let's wait if somebody
answer, otherwise I'll send you this script.
---
Pedro Paulo de M. Oliveira Junior
CIO Latam
Netfilter & SpeedComm Telecom
--- NewN
Hi Dana,
are you using vnc or nomachine or something? Have you used qdec in this
way before?
Bruce
On Tue, 14 Jul 2009, Dana W. Moore wrote:
Hi everyone,
I am trying to use qdec for the first time, and I get the following error
message:
X Error of failed request: GLXBadRenderRequest
Ma
Hi everyone,
I am trying to use qdec for the first time, and I get the following
error message:
X Error of failed request: GLXBadRenderRequest
Major opcode of failed request: 132 (GLX)
Minor opcode of failed request: 1 (X_GLXRender)
Serial number of failed request: 1705
Current ser
HI freesurfer experts!
i want to correct for intercranial volume in my qdec analysis.
To do that I want to generate a file in which the intracranial volume of each
subject is listed. do i have to use the asegstats2tabel command?
I tried it and it gave me following error message:
asegstats2table
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