I was able to resolve my issue related to OpenGL causing tksurfer and tkmedit
to have problems, and the solution may be helpful to others.
The problem was that the kernel had been updated (e.g. yum update), causing
problems for the nvidia display driver. The solution was to uninstall the
nvid
That did the trick. Thank you so much!
-Andrew
On Mon, Oct 26, 2009 at 1:57 PM, Krish Subramaniam <
kr...@nmr.mgh.harvard.edu> wrote:
> I think the Python you have is not in the standard path /usr/bin .. you can
> verify it by typing
>
> which python
>
> It's wrong for the stats2table scripts t
I think the Python you have is not in the standard path /usr/bin ..
you can verify it by typing
which python
It's wrong for the stats2table scripts to assume Python is in that
standard path. So it's a bug. For a quick fix, you can change the
first line of both files from
#!/usr/bin/python
t
Here is the output of my permissions:
[The-Ohio-State-University-Server:Angled/tmp2/AddEdge] scnlab% ls -al
$FREESURFER_HOME/bin/*stats2table
-rwxrwxrwx 1 root wheel 9013 Jan 21 2009
/usr/local/freesurfer/bin/aparcstats2table
-rwxrwxrwx 1 root wheel 13351 Jan 21 2009
/usr/local/freesurfer
- Do they have proper permissions?
ls -al $FREESURFER_HOME/bin/*stats2table
-if they do.. might something be wrong with the default Python?
can you paste the entire output you get?
Krish
On Oct 26, 2009, at 12:29 PM, Andrew Jahn wrote:
> Hi,
>
> I am running FreeSurfer version 4.3, and when I
Hi,
I am running FreeSurfer version 4.3, and when I type 'asegstats2table' I get
a "command not found" error. I have my path set correctly (virtually all of
the other commands in the freesurfer/bin directory work), but for some
reason both asegstats2table and aparcstats2table do not. Any ideas?
Hello,
I recently ran a batch file which seemed to run fine for nearly all the
participants. Yet, when I did an asegstats2table command on all the
subjects, I received the following error for three of them:
WARNING: cannot find
/nfs/01/osu5323/freesurfer/freesurfer/subjects/JUL11_2009E/stats/ase
Hi Alex,
if you tar and gzip the subject and send it to us we'll take a look.
cheers
Bruce
On Mon,
26 Oct 2009, Alex Fornito wrote:
> Hi all,
> Sorry to keep pressing this issue, but I am really stuck and need to sort
> this out before I can progress.
> I have been generating some customised an
Hi all,
Sorry to keep pressing this issue, but I am really stuck and need to sort
this out before I can progress.
I have been generating some customised annotation files, generally with 500
or more ROIs. The parcellation is done on a per hemi basis, meaning that
there will not always be the same nu
Dear Freesurfer experts,
I was running freesurfer in a normal way as usual but unfortunately I
got the following error. This is the first time I see this error. Any
ideas, please?
Many thanks in advance
Ali
Reporting on 48 segmentations
#
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