That did the trick. Thank you so much! -Andrew
On Mon, Oct 26, 2009 at 1:57 PM, Krish Subramaniam < kr...@nmr.mgh.harvard.edu> wrote: > I think the Python you have is not in the standard path /usr/bin .. you can > verify it by typing > > which python > > It's wrong for the stats2table scripts to assume Python is in that standard > path. So it's a bug. For a quick fix, you can change the first line of both > files from > #!/usr/bin/python > to > #!/usr/bin/env python > > ( this assumes env to be in your standard path.. and most of the time it > is.. if you don't have, change that line to the path of the executable -- > like #!/opt/local/bin/python ) > > The next release will fix this. > > Thanks > Krish > > > On Oct 26, 2009, at 1:46 PM, Andrew Jahn wrote: > > Here is the output of my permissions: >> >> [The-Ohio-State-University-Server:Angled/tmp2/AddEdge] scnlab% ls -al >> $FREESURFER_HOME/bin/*stats2table >> -rwxrwxrwx 1 root wheel 9013 Jan 21 2009 >> /usr/local/freesurfer/bin/aparcstats2table >> -rwxrwxrwx 1 root wheel 13351 Jan 21 2009 >> /usr/local/freesurfer/bin/asegstats2table >> >> And here's what I get just typing in the command: >> >> [The-Ohio-State-University-Server:Angled/tmp2/AddEdge] scnlab% >> asegstats2table >> asegstats2table: Command not found. >> >> I am using Python 2.4.4. Does FreeSurfer require a different version? >> >> Thanks, >> >> -Andrew >> >> >> On Mon, Oct 26, 2009 at 12:36 PM, Krish Subramaniam < >> kr...@nmr.mgh.harvard.edu> wrote: >> >> - Do they have proper permissions? >> ls -al $FREESURFER_HOME/bin/*stats2table >> >> -if they do.. might something be wrong with the default Python? >> >> can you paste the entire output you get? >> >> Krish >> >> >> On Oct 26, 2009, at 12:29 PM, Andrew Jahn wrote: >> >> Hi, >> >> I am running FreeSurfer version 4.3, and when I type 'asegstats2table' I >> get a "command not found" error. I have my path set correctly (virtually >> all of the other commands in the freesurfer/bin directory work), but for >> some reason both asegstats2table and aparcstats2table do not. Any ideas? >> >> Thanks, >> >> -Andrew >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> >
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