[Freesurfer] convert inflated surface to mnc

2009-11-04 Thread Feng-Xian Yan
Hi, Thank you for your responses before. Now, I want to convert the inflated surface of fsaverage to the .mnc file which file I want to do the template for spm. What command do I type to obtain .mnc file? Thank you in advance! Feng-Xian ___ Freesurfe

Re: [Freesurfer] convert inflated surface to mnc

2009-11-04 Thread Bruce Fischl
Hi Feng-Xian I don't think minc support surfaces, only volumes, so I doubt you can. cheers, Bruce On Wed, 4 Nov 2009, Feng-Xian Yan wrote: > Hi, > Thank you for your responses before. > Now, I want to convert the inflated surface of fsaverage to the .mnc file > which file I want to do the tem

[Freesurfer] Freesurfer installation on Ubuntu

2009-11-04 Thread Miguel Burgaleta
Hello FS experts, I am trying to install FS on Ubuntu 9.04. I am testing the installation as suggested in your website, and found the following message when attempting to start the qdec application: **

[Freesurfer] tkmedit File menu option in gray...

2009-11-04 Thread Gonzalo Rojas
Hi: Why the options "Save Manin Volume" and "Save Main Volume as" in TkMedit' "File" menu appears in gray (disabled) ?... Sincerely, -- Gonzalo Rojas Costa Department of Radiology Las Condes Clinic Lo Fontecilla 441, Las Condes, Santiago, Chile. Tel: 56-2-2105170 Cel: 56-9-97771785 www.

Re: [Freesurfer] tkmedit File menu option in gray...

2009-11-04 Thread Allison Stevens
If they are gray, it means you have not made any edits to the main volume yet (so there is nothing to be saved). The main volume is whichever volume you loaded into tkmedit first. If you made edits to the second volume (the aux volume), you have to save those changes by choosing "Save Aux Volume

Re: [Freesurfer] tkmedit File menu option in gray...

2009-11-04 Thread Sita Kakunoori
If no edits are made in the volume loaded as your main volume in tkmedit, then the 'Save Main Volume' options appear in gray. Sita. On Wed, 4 Nov 2009, Gonzalo Rojas wrote: > Hi: > > Why the options "Save Manin Volume" and "Save Main Volume as" in > TkMedit' "File" menu appears in gray (d

Re: [Freesurfer] pial error...

2009-11-04 Thread Allison Stevens
It is difficult to tell from one slice and one view what is going on but in general you can only get the pial boundary to extend more by extending the wm boundary (but of course, only where there is actual wm). The pial boundary grows out from the wm boundary so if the wm boundary is incorrect,

Re: [Freesurfer] question about preproc-sess

2009-11-04 Thread Douglas N Greve
Do you have matlab installed? doug 卯野賢太 wrote: > Hi,Freesurfers > > I'm practicing freesufer analysis with tutorial data set. > I downloaded all data and I adhere to hierarchy. > Now I'm in preprocess session. > But I get the following message in that shell every few seconds. > I'm a beginner of