Research position (PhD) in translational developmental neuroscience (with
a focus on eating disorders) at the Department of Child and Adolescent
Psychiatry, University Hospital Carl Gustav Carus,
Dresden University of Technology, Germany
PLEASE REPOST FOR INTERESTED PARTIES
Job Description: The
there's a very detailed description here:
http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis
2011/8/31 ZhiLiangLong lagosslong1...@163.com
Hi all:
Is there a way that can perform a test to compare the difference of
cortical thickness between groups (at least three)
Thanks Doug.
To check if I get the same results (as obtained using FDR) using clusterwise
correction for multiple comparison I ran a Z Monte Carlo simulation on my data
with the following command:
'mri_glmfit-sim --glmdir $SUBJECTS_DIR/sex_diff_paired_all/lh.paired-sexdiff
--sim mc-z 5000 2
You can just rename the directory ABC1234 to Case1
*mv ABC1234 Case1*
On Thu, Sep 1, 2011 at 12:01, Irwin, William wir...@memory.ucsf.edu wrote:
Hi
** **
For purposes of de-identification, is there an easy way to “rename” all the
contents of data for a processed subject?
** **
That is not going to change the information in associated files, for example
stats files.
-Wil
From: Pedro Paulo de Magalhães Oliveira Junior [mailto:p...@netfilter.com.br]
Sent: Thursday, September 01, 2011 8:09 AM
To: Irwin, William
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer]
I looked at the wiki and the FAQ but still need an answer.
In my work to get more of Freesurfer available to researchers
using our cluster, I am concerned about the 48+ hours for a run
on one subject. Our 1700 slots which can run these jobs
only promise a 24 hour time slice before evictions. Is
I have generated surfaces using the the centos4 build (version 5.0)
and want to confirm that my surface-based GM and WM volumes are correct.
For the surface-based GM calculation I originally used 'mris_anatomical_stats
-l lh.cortex.label subjectID hemi'
(run from within the 'label'
I think the .mgh/.mgz files and surfaces contain some cmdline info in
them, so it may not be so trivial. Reading and writing them in matlab will
probably remove all that stuff.
cheers
Bruce
On Thu, 1 Sep 2011, Irwin, William wrote:
Hi
For purposes of de-identification, is there an
Hi Bruce-
Not trivial to be sure!
I was hoping there was an undocumented feature/command.
Of course, everyone and their neighbor could suggest a useful feature to be
added, but this one seems particularly useful.
Thanks,
Wil
|-Original Message-
|From: Bruce Fischl
Hi Elisabeth,
the hippo stuff was never tested with the long stream. But I don't see a
reason why it should not work.
I don't know your command. is subjid the long or the cross subject?
Probably you passed the .long. subject and that is why you see that
error.
I would recommend to
recon-all
Hi Bill - You should not have a problem at all with the 24 hour limit.
Tracula runs independently of the main FS stream (actually has to be run
after the main FS stream). Times vary with different configuration
parameters and data size, and we should get around to posting some nominal
Dear Martin,
Thank you very much for your reply!
In my initial try i used the .long. subject, exactly.
So, now i will try to use, as you suggested, recon-all -long
the-crosssectional-subjectid the-base-id -hippo-subfields and it will
then automatically write the hippo-results in the already
I see, thank you so much for your time.
Noam
On Wed, Aug 31, 2011 at 10:58 PM, Douglas Greve
gr...@nmr.mgh.harvard.eduwrote:
That actually looks fine to me too. When FEAT creates a mask of the brain,
it extends the mask out a bit to make sure that it does not cut off any
brain. Every voxel
Hello,
We used to run:
grad_unwarp with matlab invoked with -nodisplay option. The version
information on this file is:
version: Version for distribution, 1.0, author: SC---
id: id9/01 13:34:11
I see that Freesurfer 5.1 has a grad_unwarp script, which I can modify
to invoke matlab with
Dear FS experts,
While doing a NIFTI conversion for my dicom files I tried near mri_convert the
MRIcron conversion. I saw that during this conversion the MRIcron is doing a
correction and image orientation such that one of my final NIFTI file is having
a smaller size that the NIFTI file
Hello All,
I noticed the following in FreeSurferColorLUT.txt
8001 Thalamus-Anterior 74 130 181 0
8002 Thalamus-Ventral-anterior 242 241 240 0
8003 Thalamus-Lateral-dorsal 206 65 78 0
8004
Futuristic, iut hopefully not that long!
On Sep 1, 2011, at 9:25 PM, Ritobrato Datta rida...@mail.med.upenn.edu wrote:
Hello All,
I noticed the following in FreeSurferColorLUT.txt
8001 Thalamus-Anterior 74 130 181 0
8002 Thalamus-Ventral-anterior
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