Thank you Anderson,It looks like do just what I want to do, but I'm having a problem, I've give the permissions to make the file an executable as follows chmod +x /root/freesurfer/bin/aseg2surf but when I call it always say that bash: aseg2surf: command not found. My FS v5.1 is working properly
Well now the aseg2srf script is working perfectly, it was a thing of the shell (changed to: #!/bin/sh -f) and the format of the script when I'd downloaded it.Now I'm wanting to use the srf2obj script, and something similar happens, but since it is for gawk I have no idea how to change it or fix it
Hi Gabriel,
This sounds like a problem with downloading. Are you copying and pasting
the content of the scripts rather than downloading? Are you copying from
a Windows computer? Gawk is just a replacement for awk with a more
permissive license and more features. It is the default in Linux and
Hi,
I'd recommend to use time for the order when processing. The order of time
points is not relevant in the longitudinal stream but this way the design is
more balanced.
Best Martin
On May 7, 2012, at 23:59, lordowen lordowe...@gmail.com wrote:
Hi all:
We performed a thickness change
Anderson, I'm downloading using a windows computer (but I always do like that with every single script), which automatically recognizes the scripts as txt files and add the extension, could you send me a link to the downloading page? That way I can try again and see what happens. I did check in my
Hi Gabriel,
Please, try downloading from here:
http://dl.dropbox.com/u/2785709/aseg2srf
http://dl.dropbox.com/u/2785709/srf2obj
Right-click and click Save As, to avoid Windows opening it up and
messing up with character encoding. I'll write up a page about the
aseg2srf and send the link
Hi,
I tried to run longitudinal analysis, I started by reading the
LongitudinalTutorial
(http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/LongitudinalTutorial)
In order to follow the tutorial, I downloaded the longitudinal tutorial dataset
(long-tutorial.tar.gz) here
ok, just posted... please, see here: http://brainder.org
On 08/05/12 15:51, Anderson Winkler wrote:
Hi Gabriel,
Please, try downloading from here:
http://dl.dropbox.com/u/2785709/aseg2srf
http://dl.dropbox.com/u/2785709/srf2obj
Right-click and click Save As, to avoid Windows opening it up
Hi Anderson,Now everything works perfectly, thank you so much!!!Best Regards,Gabriel
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only
you can ignore those missing links. the tutorial should still work.
n.
On Tue, 2012-05-08 at 15:34 +, Natacha Beck, Ms wrote:
Hi,
I tried to run longitudinal analysis, I started by reading the
LongitudinalTutorial
Thank you for your reply,
I try to run the first command
recon-all -subjid OAS2_0001_MR1 -all
and I receive the following trace:
Tue May 08 user1 /Applications/freesurfer/subjects/long-tutorial =recon-all
-subjid OAS2_0001_MR1 -all
INFO: FreeSurfer build stamps do not match
Subject Stamp:
you do not need to run recon-all -all on the tutorial subjects, as is
stated in the tutorial. its already been processed.
On Tue, 2012-05-08 at 19:16 +, Natacha Beck, Ms wrote:
Thank you for your reply,
I try to run the first command
recon-all -subjid OAS2_0001_MR1 -all
and I
12 matches
Mail list logo
