Hi Joe, that is an overlay for a surface, not a surface itself. It just
has a value for each vertex. A surface has geometry and neighborhood
info. Try using MRIread.m instead.
doug
On 7/14/13 3:57 PM, Joseph Dien wrote:
I've been trying to use the read_surf.m Matlab function included in
the M
I've been trying to use the read_surf.m Matlab function included in the Matlab
folder of 5.3.0 on a Mac under Matlab 2013a.
>> [vertex_coords, faces] = read_surf('fmcpr.sm5.fsaverage.lh.nii');
Undefined function or variable "vertex_coords".
Error in read_surf (line 77)
vertex_coords = reshape(
Dear FreeSurfer team,
Firstall, thanks a lot to your great contribution in the neuroscientific and
the free software world.
I would like to know if is it possible to make a plot activation foci (i.e.
example by PySurfer: http://pysurfer.github.io/auto_examples/plot_foci.html) by
FreeSurfer
Hi Jeff,
If you run recon-all on your individual subjects, it would have
automatically generate the registration files (?h.sphere.reg) to fsaverage.
Doug's reply about mri_surf2surf should work. You just need to apply
mri_surf2surf separately for the left and right annots.
Cheers,
Thomas
On Sun
mris_info should give you surface area
On Jul 14, 2013, at 7:37 AM, Irene Altarelli wrote:
> Dear all,
>
> how can I measure the surface area of the outer surface computed to
> calculate lgi? I've tried mris_anatomical_stats subject lh
> pial-outer-smoothed but that doesn't work (since it d
Dear Doug & Bruce,
It's indeed a confusing situation. What it boils down to is:
- I scanned the polar angle session and the eccentricity session on
different days
- I had defined V1-3 already based on the polar angle session before
scanning eccentricity
- All data from the polar angle session wer
Dear freesurfer experts and users,
we visualize white matter tracts of anorexia nervosa patients which are
characterized by more movements in mri studies.
We have the impression that we get worser TRACULA outputs by using bbregister
than flt.
Could it be possible that bbregister needs a higher r
Dear all,
how can I measure the surface area of the outer surface computed to
calculate lgi? I've tried mris_anatomical_stats subject lh
pial-outer-smoothed but that doesn't work (since it doesn't match lh.pial).
Any idea would be greatly appreciated.
Thank you,
Irene
_
