Hello,
I plan on using the aseg.nii to create a grey matter mask. I want to warp
these grey matter masks to MNI space. I have been trying to use @auto_tlrc in
AFNI to do this warping but am having some trouble.
The reason I need this in MNI space is because I plan to make a group grey
matter
Thanks Doug, that did the trick.
On 13-11-15 20:13 , Douglas N Greve wrote:
> use this version
> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/reg-feat2anat
>
> On 11/15/2013 02:04 PM, Greg Reckless wrote:
>> I am having the same problem with a newer version of tcshell and
>> reg-
Ok great! Thanks for the quick responses, and for your help.
Best,
Krista
On Sun, Nov 17, 2013 at 1:26 PM, Bruce Fischl wrote:
> no, those are whole-brain parcellations so ever vertex is already assigned
> the most likely label for it
>
>
> cheers
> Bruce
> On Sun, 17 Nov 2013, krista kelly wro
no, those are whole-brain parcellations so ever vertex is already
assigned the most likely label for it
cheers
Bruce
On Sun, 17 Nov 2013, krista kelly
wrote:
Ok perfect. Just one last question, how would I use the thresholded option
for the annotations (i.e. aparc.DKTatlas40.annot, aparc2009
Ok perfect. Just one last question, how would I use the thresholded option
for the annotations (i.e. aparc.DKTatlas40.annot, aparc2009s.annot) when
doing whole brain analyses?
Thanks!
On Sun, Nov 17, 2013 at 1:20 PM, Bruce Fischl wrote:
> for most purposes, yes
>
> Bruce
> On Sun, 17 Nov 2013,
for most purposes, yes
Bruce
On Sun, 17 Nov 2013, krista kelly wrote:
> Great thanks Bruce! I'm assuming then that using the thresh.label is the
> best choice.
>
>
> On Sun, Nov 17, 2013 at 12:50 PM, Bruce Fischl
> wrote:
> Hi Krista
>
> the unthresholded labels give every point tha
Great thanks Bruce! I'm assuming then that using the thresh.label is the
best choice.
On Sun, Nov 17, 2013 at 12:50 PM, Bruce Fischl
wrote:
> Hi Krista
>
> the unthresholded labels give every point that has a non-zero probability
> of being in the label, no matter how unlikely. The .thresh ones
Hi Krista
the unthresholded labels give every point that has a non-zero probability
of being in the label, no matter how unlikely. The .thresh ones are
thresholded to pick the most likely vertices that give a label that is
the right surface area.
cheers
Bruce
On Sun, 17 Nov 2013, krista kelly
Hi, I've just started using the newest freesurfer v 5.3 and I've noticed in
the labels folder that every .label has a thresh.label. When overlaying the
two, they can be quite different (for example MT.label is much larger than
MT.thresh.label) or quite similar (V1.label is just a tiny bit larger th
You can read about it here:
http://www.frontiersin.org/Brain_Imaging_Methods/10.3389/fnins.2012.00171/abstract
From: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of krista kelly
[krista.kell...@gmail.com]
Sent:
Thank you. I have tried to write a script to make this above process
automatic but it doesn't work. Any tips on how to make the above process
into a script for a number of subjects ?
Kind Wishes,
Anna
On Thu, Nov 14, 2013 at 7:39 PM, Douglas N Greve
wrote:
> I think it would be
>
> --parc apa
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