Hi FreeSurfers,
A related question (I can't find the answers on the FS website): what's
jacobian_white (as a measure)?
Thanks!
Daniel
--
Daniel (Yung-Jui) Yang, Ph.D.
Postdoctoral Researcher
Yale Child Study Center
New Haven, CT
Tel: (203) 737-5454
E-mail: yung-jui.y...@yale.edu
On 3/2/14 7:18
Dear FreeSurfer Experts,
FS provides thickness as the DV in qdec and mri-glmfit. Do you know how I can
have WM vol as the DV in these tools with the same GLM model? For example, I
want to test the WM regions that is most strongly positively correlated with a
given factor.
Thanks!
Daniel
__
That means that it was expecting to find 66 segmentations but only found
55. Sometimes there are some segmentations in one subject that are not
in another (usually hypointensities). But 11 is too many. Have you
looked at the aseg to see if it looks right? You can also compare the
aseg.stats f
Hi Victor
hmmm, I'm not sure why that didn't work. Perhaps someone else can
comment? Doug or Nick: if the aseg.mgz is recreated and you start with
-autorecon2-cp shouldn't it propagate the effects of the new aseg forward?
cheers
Bruce
On Thu, 27 Feb 2014, Victor Kovac wrote:
Dear Bruce,
H
Hi all,
While using asegstats2table, I got following error for few subjects,
WARN SUBID: nmeasure 66, expecting 55
It let me extract cortical thickness and surface area using aparcstats2table
though.
Any suggestions?
-SABIN___
Freesurfer mailing list
Fr
Hi Anna,
No, you can still use links. When rerunning the base, the cross are not
changed. Once the base loiks good, you also have to rerun the longs of course.
Best Martin
Sent via my smartphone, please excuse brevity.
Original message
From: Anna Jonsson
Date:03/02/2014 5:
Hi thank you for reply. May I ask other question; after editing the base it
says to reocnstruct with recon-all -base -tp1 -tp2 etc. Does this require
that all scans are located in the same directory? (Before i used symbolic
links as scans are in different directories) but i am unsure whether after
Hi,
I am trying to display the 20 ICA components in this nifti file
http://brainmap.org/icns/maps.zip
onto anatomical template they've provided here
http://brainmap.org/icns/colin_tlrc_1x1x1.nii
My question is:
How do I extract only the cortical surface from the anatomical template and
