[Freesurfer] Generating individual statistics on a manually traced segmentation/label

2014-03-23 Thread Eileen Moore
Hello FreeSurfer experts, I am using freesurfer v5.3 on a linux os. I have a few questions regarding individual aseg statistics (volume, intensity) for a subcortical region that is not automatically segmented by freesurfer. Using tkmedit I have manually traced my subcortical ROI and saved it

Re: [Freesurfer] Group comparisons

2014-03-23 Thread Tudor Popescu
Hi Doug, 3) In a group X gender X age DODS design, exactly which contrast (interaction) has to be examined in order to see if the analysis proceeds as DODS or as DOSS? And what would the course of action be assuming there are significant clusters for that contrast? group X gender X age,

Re: [Freesurfer] reconstruction problem with pediatric images

2014-03-23 Thread Alexopoulos, Dimitrios
will this future pipeline include processing neonatal data? If so, will it use both T1/T2 acquisitions? Thanks. JIm From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Lilla Zollei

Re: [Freesurfer] Difference in volumes btw 5.1 and 5,3

2014-03-23 Thread jh kim
Dear Prof. Fischl Thanks for the valuable comments. Kim 2014-03-23 3:26 GMT+09:00 Bruce Fischl fis...@nmr.mgh.harvard.edu: Hi Kim we of course always strive to make things more accurate, but in the end it will depend on the details of your acquisition and such. I don't think I have a