Thank Bruce.
I have uploaded the case to transfer/incoming in surfer.nmr.mgh.harvard.edu
My file is missingRightParcLabels.tar.gz
Mehul
On Fri, Aug 15, 2014 at 3:17 PM, Bruce Fischl
wrote:
> Sure, upload it and one of us will take a look
>
> Bruce
>
> On Aug 15, 2014, at 10:28 me PM, Mehul Sam
Sure, upload it and one of us will take a look
Bruce
> On Aug 15, 2014, at 10:28 me PM, Mehul Sampat k wrote:
>
> Hi Bruce,
> rh.aparc.stats looks good and also rh.aparc.a2009s.stats looks correct.
> However, both aparc+aseg.mgz and aparc.a2009s+aseg.mgz have the issue with
> missing parcell
Hi,
I am running Hippocampal subfield processing stream and I think I got all the
appropriate "posterior_*.mgz files" I need to get the stats, but I am not
seeing "nonPartialVolumeStatsRight.txt" anywhere as described in the wiki
under $subjectsdir. What I am seeing is "volumeStats_left.txt" a
Hi Bruce,
rh.aparc.stats looks good and also rh.aparc.a2009s.stats looks correct.
However, both aparc+aseg.mgz and aparc.a2009s+aseg.mgz have the issue with
missing parcellation labels in right hemisphere.
Also I suspect the issues starts occurring in rh.ribbon.mgz and ribbon.mgz
(missing labels)
Thanks very much, Douglas.
That is very helpful -- definitely newbie questions ...
Regards,
Don
Don Krieger, Ph.D.
Department of Neurological Surgery
University of Pittsburgh
(412)648-9654 Office
(412)521-4431 Cell/Text
> -Original Message-
> From: freesurfer-boun...@nmr.mgh.harvard.
Hi Katharina, I don't understand from your description what you are
trying to do. Can you clarify?
doug
On 08/14/2014 09:23 AM, Katharina Zech wrote:
> Dear all,
>
> I want to do a correlation of significant clusters found after full
> monte-carlo simulation and symptom severity of patients af
On 08/12/2014 01:25 PM, Krieger, Donald N. wrote:
>
> _segmentation vs parcellation_:
>
> Segmentation appears to mean identifying and assigning voxels to a
> label which maps to a gross structure like thalamus, left cortex, etc.
> Parcellation appears to mean the same but for mappings at higher
Dear all,
I am trying to perform a longitudinal lme analysis using freesurfer 5.3.0. For
qdec tables with many columns the asegstats2table (and similarly
aparcstats2table) commands fail with error message:
asegstats2table --qdec-long ./qdec/long.qdec.table.dat --delimiter space
--meas volume
How does the rh.aparc look?
> On Aug 14, 2014, at 8:13 PM, Mehul Sampat wrote:
>
> Hi Folks,
> We have a strange error for one case. For one case there are missing cortical
> parcellation labels in aparc+aseg.mgz file in the right hemisphere (see
> screenshots)
>
> I looked at the recon-all.
