Hi Angela
that actually looks ok. It should follow the gray/white boundary I
believe. Have you looked at it in the individual subject space without
mapping it to the MNI coords? I think there are options in mri_label2vol to
fill in the whole cortical ribbon instead of just painting the gray/whi
Hi Elahe'
I'm surprised it ran that long as it basically failed right away. If you
run it as:
recon-all -all -subjid EY
which is what you did, you must put the data in the EY/mri/orig
directory. If you want to specify the input volume(s) directly, put -i
on the command line (more than once
Hi Bruce,
I have followed your suggestions using the 'custom fill' botton and then
saving the label and using mri_label2vol. This is the command I used:
mri_label2vol --label gyrif_lh.label --temp MNI152_T1_1mm_brain.nii.gz
--reg $FREESURFER_HOME/average/mni152.register.dat --o gyrif_lh.nii.gz
Ho
Hi all,
I have a problem with freeview and I am not sure about the command line to
be used to view a mask.
I have created an annot file and I would like to have a picture of the
mask in the inflated brain with curvature. However when I use the annot
file with tksurfer I am able to do so, but with f
