Hi all, I have a problem with freeview and I am not sure about the command line to be used to view a mask. I have created an annot file and I would like to have a picture of the mask in the inflated brain with curvature. However when I use the annot file with tksurfer I am able to do so, but with freeview the brain become all black (not in the mask) when the annot file is used. I have read the freeview manual, but I did not fond help in using freeview with command line. Where can I find some help?
the command with tksurfer was: tksurfer fsaverage lh inflated -curv -gray -annot mymask.annot with freeview I tried this: freeview -f fsaverage/surf/lh.inflated:overlay=lh.curv:overlay_threshold=2,5 :annot=mymask.annot -viewport 3d thank you for any help! Angela _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
