Dear Jürgen,
Thanks for your reply. Could you please guide me on how to downgrade it? I
need to try everything with these 8 subjects to finish the whole cohort of
subjects.
Your help is so appreciated.
Thanks,
Ali
On Sat, Aug 29, 2015 at 4:16 PM, Jürgen Hänggi j.haen...@psychologie.uzh.ch
Dear FreeSurfer experts,
I have sent email 10 days ago asking for a help with processing 8 out of 55
subjects who failed to pass the Talairach phase and gave me the following
error:
tmpdir is transforms/tmp.talairach.5272
Dear Ali
if Talairach alignment is not of good quality, then mritotal is used and the
shellwords.pl problem is related to the fact that you have a newer version
of perl that no longer contain shellwords.pl.
you can downgrade perl to 5.12 or so, which however, is not a good idea.
I have no
Thanks Lee. I'll see how this works. I hope these examples make me an expert
too.
Best,
Jennifer
-Original Message-
From: Lee Tirrell [mailto:ltirr...@nmr.mgh.harvard.edu]
Sent: Saturday, August 29, 2015 5:50 PM
To: Kriegel, Jennifer Lynn Sarai
Cc: Freesurfer support list
Subject: RE:
Hi Lee,
I’m replying to the list on this, in case anyone else echoes this trouble when
altering surfaces. In addition to the email help, I also checked the thread
noted, which specified that the recon-all.log file would have the line
information. I followed the mri folder commands you
