Re: [Freesurfer] recon-all pipeline for (sub-millimeter) 7T data

It works pretty well, thanks ! > On Oct 18, 2015, at 14:10, Bruce Fischl wrote: > > you can use the -cm flag, but you might want to try out a beta of v6 instead > of 5.3 > On Sun, 18 Oct 2015, Yun Wang wrote: > >> Glad to hear this ! So how should I specify high

Re: [Freesurfer] MPRAGE SNR

Dear John FS's QA tools provide the SNR see https://surfer.nmr.mgh.harvard.edu/fswiki/QATools there is also a FS function called wm-anat-snr that can be used for that. Hope this helps Cheers Jürgen

Re: [Freesurfer] recon-all pipeline for (sub-millimeter) 7T data

Glad to hear this ! So how should I specify high resolution structure using recon-all command? > On Oct 17, 2015, at 10:09, Bruce Fischl wrote: > > High resolution fMRI has always been supported. V6 beta has better support > for high-resolution structurals. If

Re: [Freesurfer] recon-all pipeline for (sub-millimeter) 7T data

you can use the -cm flag, but you might want to try out a beta of v6 instead of 5.3 On Sun, 18 Oct 2015, Yun Wang wrote: Glad to hear this ! So how should I specify high resolution structure using recon-all command? On Oct 17, 2015, at 10:09, Bruce Fischl

[Freesurfer] MPRAGE SNR

Dear Experts, Is there any tool in Freesurfer that can help to evaluate the SNR for T1 MPRAGE images directly ( i.e script). If not knidly can any help me to figure out the best way to dao it.   I highly appreciate your help!   Bests, John Anderson Senior Research Associate Psychological and