On the vcAtlas website, it says "The cytoarchitectonic atlas is
available on the FreeSurfer average surface (fsaverage). Thus your data
need to be aligned to the fsaverage brain." so I assumed the input label
is in fsaverage space. Only labels and annot files are available from
the vcAtlas -- so I
Hi all,
Sorry in advance, this is a bit of an annoying one!
I am trying to use freesurfer's automatically generated MT label as a parcel to
constrain activity measured during a functional MT localizer. I am currently
doing my analysis in the volume and I'd like to transform the MT surface label
Dear experts,
while running recon-all on FreeSurfer 5.1.0 I encountered the following error:
mri_watershed Error: indices out of bounds
I searched the email archive and found this thread:
https://www.mail-archive.com/search?l=freesurfer@nmr.mgh.harvard.edu&q=subject:%22\[Freesurfer\]+mri_watershed
Hi Doug,
Sure. I have attached an excel sheet.
I have averaged the signal magnitude across 16 blocks of objects, and 16
blocks of scenes, separately. Each block has 8 TRs (TR=2).
The top plot is the data with the default -TR/2 delay.
The bottom plot is the data with -2TR delay.
In both plots, we
It looks like brainmask.mgz might have been corrupted. Can you run
mri_info on it? Does its size look about right? Can you create
brainmask.mgz again?
On 3/29/18 4:06 PM, Anna Daniels wrote:
Dear FreeSurfer team,
after editing the brainmask.mgz (manually or with gcut),
brain.finalsurfs.mane
not sure what you are trying to do. can you send a picture? the default
lag is TR/2
On 3/29/18 2:30 PM, Sarah Cole wrote:
Thanks, Doug.
I added (-4s) delay and plotted the data but I got the same delay as
no shift. Also I did (+4) delay and lost most of the activation.
Do you have any reco
Hello,
please find my responses below.
Best regards,
Kersten
On Do, 2018-03-29 at 00:11 +0200, Kaushal, Mayank wrote:
Hi Kersten,
Apologies for the delay. I am still in the process of trying to figure out the
gaps in my understanding and would appreciate your inputs.
I created the design X
