Re: [Freesurfer] Missing files in mri_glm

2018-09-24 Thread srishti goel
External Email - Use Caution I understand. Thank you so much! :) Best, Srishti Social/Clinical Research Specialist Child Imaging Research and Life Experiences Lab University of North Carolina at Chapel Hill email (W): srish...@email.unc.edu skype: srishti.goel12 On Mon, Sep

Re: [Freesurfer] Missing files in mri_glm

2018-09-24 Thread Greve, Douglas N.,Ph.D.
I can't remember that far back:), but it would not surprise me if they were not there in 5.3. You can always use the v6 mri_glmfit with 5.3 data. On 09/24/2018 12:39 PM, srishti goel wrote: > > External Email - Use Caution > > Alright, yes I am using 5.3. What about the efficiency and z

Re: [Freesurfer] Missing files in mri_glm

2018-09-24 Thread srishti goel
External Email - Use Caution Alright, yes I am using 5.3. What about the efficiency and z files? Best, Srishti Social/Clinical Research Specialist Child Imaging Research and Life Experiences Lab University of North Carolina at Chapel Hill email (W): srish...@email.unc.edu skype:

Re: [Freesurfer] Missing files in mri_glm

2018-09-24 Thread Greve, Douglas N.,Ph.D.
What version of FS are you using? The pcc may only be in the v6. On 09/24/2018 12:10 PM, srishti goel wrote: > > External Email - Use Caution > > Hi, > > I am running analysis to compare group difference in thickness between > two groups. I followed all the steps outlined on the wiki: >

[Freesurfer] Missing files in mri_glm

2018-09-24 Thread srishti goel
External Email - Use Caution Hi, I am running analysis to compare group difference in thickness between two groups. I followed all the steps outlined on the wiki: https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis. Everything seemed to work fine except I didn't

[Freesurfer] Available postdoctoral position in Norway: application deadline September 30th

2018-09-24 Thread Alexander Olsen
External Email - Use Caution There is a temporary position available at the Department of Psychology as postdoctoral fellow in multimodal neuroimaging for a period of 2 years.The postdoctoral fellow will work at the Clinical Neuroscience Laboratory

Re: [Freesurfer] make_average_subject error

2018-09-24 Thread C.P.E. Rollins
External Email - Use Caution Hi Douglas, Yes - attached here is the make_average_subject.log file. The command used was: make_average_subject --out average_v2 --subjects $(cat subjects.txt) subjects.txt also attached. Thanks again for your help Colleen setenv SUBJECTS_DIR

[Freesurfer] PhD in visual perceptual learning at the Neural Circuits and Cognition lab @ ENI & German Primate Center Göttingen

2018-09-24 Thread Caspar M. Schwiedrzik
External Email - Use Caution The European Neuroscience Institute in Göttingen (ENI-G) Germany, a partnership between the University Medical Center Göttingen and the Max-Planck-Society, is seeking a *Ph.D. student * About us: The Neural Circuits and Cognition lab of Caspar

Re: [Freesurfer] mri_glmfit-sim error

2018-09-24 Thread C.P.E. Rollins
External Email - Use Caution Hi Douglas, Yes, the file (/lustre/group/p00355/REST_Beijing_SCZ/Freesurfer/fsaverage/surf/rh.white) exists, I can view it in Freeview and have read permissions. I had recently tried downloading this patch:

[Freesurfer] Visualization fo brain vessels

2018-09-24 Thread Patrik Krumpolec
External Email - Use Caution Good morning! I want to ask if it is possible to visualize compartment of brain vessels in freesurfer through freeview. Thank You very much and have a nice day! patrik krumpolec ___ Freesurfer mailing list