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Hi Freesurfer devs,
Is there any way to export all the stats using an unique command? For
example, export the mean area, volume, thickness, thicknessstd, meancurv
values of the Desikian-Killiany atlas using an unique command or is only
possible export
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Hi, I'm Kazuhiro.
I also met trouble for compilation of freesurfer stable6 repository under my
Ubuntu 18.04 LTS machine.
Even the binary package of
freesurfer6.0(freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz) can work
under Ubuntu 18.04, o
Hi Miguel
the stats are already stored in a text file in the stats dir. Do you need
something not in those files?
cheers
Bruce
On Thu, 1 Nov 2018, Miguel Ángel Rivas
Fernández wrote:
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Hi Freesurfer devs,
Is there any way to export all the stat
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Hi Bruce,
No, I would want to export all measures in a xls or sav file in order todo
perform external analysis. The question is if it's possible to export
jointly the mean area, volume...measures in an unique file. I have tried It
using the asegstats2
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Hello Christian,
To build Freesurfer e.g., on CentOS7, we use rev 4.8.5 of gcc, g++ and
gfortran. You can tell cmake what compilers to use on the command line
with CC=/gcc CXX=/g++
FC=/gfortran If you need to specify the gfortr
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Hello Kazuhiro,
With the old configure/automake tools, I used the following configure command
on a CentOS7 machine (release 7.4.17-8) to build with the 5.0.35 Cuda
distribution with the CentOS6 packages archive. (My cuda 5 distribution
was installe
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Hello FS experts,
I am using longitudinal processing pipeline (
https://surfer.nmr.mgh.harvard.edu/fswiki/LongitudinalProcessing) to
calculate the cortical volume (CV) over a course of treatment (two
conditions: pre condition and post condition). In fa
Hi,
I extracted some volumes using mri_annotation2lable --> mri_aparc2aseg -->
mri_segstats .
Now I am trying to extract the summary table using aparcstats2table
--parcs-from-file , but every time an error message pops up:
ERROR: cannot read
The stats files generated by the mri_segstats l
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In the visualization step of Tracula processing, freeview -tv
merged_avg33_mni_bbr shows some tracts with very high threshold (i.e. 171),
which make them look like the reconstruction-failed ones.
The tracts failed to reconstruction usually show thresh
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Thank you for information of build parameter at CentOS6 packages archive.
I also remember. Ubuntu 18.04 Default gcc/g++/gfortran compiler is now version
7.3.0-27.
Therefore, at the compilation of freesurfer in Ubuntu 18.04, I have installed
gfortran-
They are not random, they are 20% of the maximum value. If you want to generate
stats at a different threshold, you can find the dmri_pathstats command line in
trac-all.log and add the --pthr option (the default 20% would be --pthr .2).
On Nov 1, 2018 9:01 PM, June Kang wrote:
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I think there is no option to set custom color code for overlay from
command-line. I’ll add that option and let you know when it’s ready.
Best,
Ruopeng
> On Nov 1, 2018, at 4:51 PM, Nillo, Ryan Michael R
> wrote:
>
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> Hi Freesurfer Users,
>
> I
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Hi experts,
I am using FS 6.0 for analyzing the cortical thickness difference between 3
groups: patient1, patient2 and control. In DODS model, I need to creat 2 files,
FSDG and mtx file. And we have 3 variables: age, gender and cortical
thickness.
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Hi:
Could you please tell me if Is there is a paper on myelination and
segmentation?
Sincerely,
Gonzalo Rojas Costa
Laboratory for Advanced Medical Image Processing
Department of Radiology
Clínica las Condes
Lo Fontecilla 441, Las Condes, Santi
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