Re: [Freesurfer] Program installation - fmriprep {Disarmed}

External Email - Use Caution Hi Zeynab, that’s a “classic”, which is actually more suited for neurostars.org as all fmriprep Q&A happens over there. That being said, you need to provide a Freesurfer license file when running fmriprep (check the corres

[Freesurfer] Surface based analysis - circular analysis?

External Email - Use Caution Dear experts, I have three groups: - pre treatment (baseline) - post treatment (follow-up after 6 month of the baseline visit) - healthy controls. The three groups have PET data. I ran surface based paired t test between pre and post treatment. The a

Re: [Freesurfer] Does data orientation (Neurological Vs. Radiological) produces different results

Hi Meena hmmm, I'm not sure what to tell you. The borders of the accumbens are not very well defined (one reason the CMA called it "accumbens area" instead of just "accumbens"). I guess we can check our atlas data to see if there is any asymmetry there Bruce On Sat, 15 Dec 2018, Meena M. Ma