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Dear Dough,
The terminal output: HV_02_11_p2x7
mghRead(/Volumes/DATA_PETMR/data_donatienne/Boston_final_analysis/Donatienne/Analyses_freesurfer/recon_flair/unknown/mri/orig.mgz,
-1): could not open file
ERROR: loading
/Volumes/DATA_PETMR/data_donatienn
Hi Vasudev, are you using an old dev distribution? This was an issue a while
back, but it’s fixed now.
Andrew
From: on behalf of Dev vasu
Reply-To: FS Help
Date: Thursday, April 25, 2019 at 3:30 PM
To: FS Help
Subject: [Freesurfer] mri_convert : Error while loading library
libGLdispatch.so.
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Dear all,
I am trying to convert .mgz file to nii.gz using mri_convert command
mri_convert filename.mgz filename.nii.gz
but i am getting an error
"mri_convert: error while loading shared libraries: libGLdispatch.so.0:
cannot open shared object file:
What is the output of running:
ls -ld /home/dujiachen/HCP/human_connectome/female_processed/fsaverage
From: on behalf of chen
<824247...@qq.com>
Reply-To: FS Help
Date: Thursday, April 25, 2019 at 7:46 AM
To: FS Help
Subject: [Freesurfer] fsaverage error with recon-all
External Email
On 4/25/19 10:54 AM, Zhi Li wrote:
>
> External Email - Use Caution
>
> Dear FreeSurfer experts,
>
> I am reading your work 'False positive rates in surface-based
> anatomical analysis' and having several questions about multiple test
> correction in mri_glmfit-sim:
>
> 1. The permutati
can you send command line and terminal output?
On 4/25/19 10:37 AM, Donatienne Van Weehaeghe wrote:
>
> External Email - Use Caution
>
> Dear freesurfer experts,
>
> I am running the rbv pvc correction on a mac system and encountered
> the following error.
>
> mghRead(/Volumes/DATA_PETMR/
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Dear FreeSurfer experts,
I am reading your work 'False positive rates in surface-based anatomical
analysis' and having several questions about multiple test correction in
mri_glmfit-sim:
1. The permutation is permuting the design matrix, but how to pe
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Hello,
Have you got some time to check my data?
I appreciate if you can give me some advices.
Thank you very much.
Ruwan
On Tue, Apr 23, 2019 at 7:41 PM Pradeepa Ruwan <
pradee.wanniarach...@gmail.com> wrote:
> Dear Prof.Bruce,
>
> I am sending my ra
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Dear freesurfer experts,
I am running the rbv pvc correction on a mac system and encountered the
following error.
mghRead(/Volumes/DATA_PETMR/data_donatienne/Boston_final_analysis/Donatienne/Analyses_freesurfer/recon_flair/unknown/mri/orig.mgz,
-1): c
Hi Marina
there is a tutorial on fixing defects you can look at here:
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TopologicalDefect_freeview?highlight=%28tutorial%29%7C%28topology%29
I find the best way to do this is to load the lh.orig.nofix and
lh.inflated.nofix (or the rh), then lo
Hi René
our volume calculation corrects for partial volume effects, so it does
more than just counting voxels.
cheers
Bruce
On Thu, 25 Apr
2019, Schranzer René wrote:
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Hello FreeSurfer Developers,
I was wondering about the volume calculation
Thank you. Now I understand the last changes to this functionality.
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Greve, Douglas N.,Ph.D.
Sent: Wednesday, April 24, 2019 9:47 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] ERROR: flir
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Yes I have been try to processes other subjects in Freesurfer,I have installed
freesurfer a little while ago and to test my installation,I did full recon-all
to single subject T1w data but I get an error like this.But I solved the
problem.I used free
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Hello FreeSurfer Developers,
I was wondering about the volume calculation of the structures in the
aseg.stats file.
VoxelVolume_mm3 0.512
NVoxels 8616Volume_mm3 4312.4 StructName Right-Hippocampus
After my calculation of NVoxels * VoxelVolume
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