Dear all,
based on this thread:
https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2017-April/051591.htm
l
Is there any update for this?
I have a MacBookPro with MacOs Mojave (10.14.3) and I'm facing the same
issue with FreeSurfer 6.0.0 stable.
Start FreeView via launch pad is fail
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Doug,
We are still seeing differences, but I notice that the results from segstats
are all whole integers, while the results from surfcluster (Max cluster size)
is not. I assume this is because surfcluster is using partial volume. How do
we implem
Hi Sam
the labels are already ascii
cheers
Bruce
On Tue, 23 Jul 2019, Sam W. wrote:
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Hi,
Is it possible to convert a label file like rh.cuneus.label into asc? I
tried
mris_convert --label rh.cuneus.label ctx-rh-cuneus rh.white rh.cuneus.asc
but g
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Thanks Bruce. Can I ask you a very basic question? What exactly is the
difference between a surface and a label file? I thought the difference was
that the label file is just a normal text file containing the vertices that
are used to construct a surfac
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Hello Sebastian,
Please download the zip archive from the following link,
https://drive.google.com/file/d/1w0vZyWTY0HrbcDiP1jWsmGl_GMUSh7tR/view?usp=sharing
Then expand and read the README.patch file and follow the instructions.
When you are done, you
Hi Freesurfers,
Is it possible to view two overlays on one surface image using TkSurfer? One of
the surface overlays is binary while the other isn't. I have been able to load
them both onto TkSurfer but I can only view one at a time.
Kind regards,
Zeynab Alshelh, PhD | Postdoctoral Rese
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Dear Kersten,
Thank you so much for the quick reply! It was really helpful!!
I still have a couple of doubts regarding the visualization of the results
if you don't mind.
After running the last command *fs_write_Y(sided_pval,mri,'**spval_lh.mgh')*,
I
Hi Sam
they are not the same. A label is just a list of vertices in the surface
(with some possibly voxel coordinates and also with a single value/vertex).
It doesn't have to be ever vertex in the surface, and also contains no
information about topology (e.g. which vertices are connected by an
Hi Zeynab
tksurfer has been deprecated for years. Can you use freeview instead? You
can do this in freeview by loading one as a "curvature" map and the other
as an overlay
cheers
Bruce
On Wed, 24 Jul 2019, Alshelh, Zeynab
wrote:
Hi Freesurfers,
Is it possible to view two overlays on on
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Dear Freesurfer,
Does my T1 MPRAGE need to be in a particular orientation prior to running
recon-all? Meaning should I use mri_convert to change to RAS orientation to
avoid any L/R confusion with the output measures.
For instance, mri_info says the or
Hi Abid
nope, you shouldn't have to, as long as the header info is correct. Does it
come up properly in freeview? That is, does what freeview thinks the
orientations are match what they really are?
cheers
Bruce
On Wed,
24 Jul 2019, Abid Qureshi wrote:
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Dear Freesurfer experts,
Greetings!
In the first minute of recon-all, we are getting following error:
mghRead(/media/results/mri/rawavg.mgz): could not read 262144 bytes at
slice 0
T1 data type is int16, data type 4 (looked using fslinfo)
Looking
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