Sorry for the delay ...
First, run selxavg3-sess with -fwhm ( you might need to delete the
bold/analysis folder to get it to re-run).
cd session/bold/analyis
There will be a filed called fwhm.dat. Look in that. Depending upon how much
you smoothed it might be something like 10.395. This is the
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Dear Juan Eugenio, thanks for your answer. I tried to do with the corrected
images and wit the raw ones (before the correction), and I got the same
error. Then I tried with two patients more and happened the same. I donĀ“t
know if it is due to the dev ve
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Hi Kersten,
That would be very helpful thank you. What email address should I designate as
the recipient when using Freesurfer FileDrop?
Kind regards,
Bronwyn Overs
Research Assistant
Neuroscience Research Australia
Margarete Ainswo
Hi Asim
if you edited the brainmask in recon-mode in freeview the edits will be
detected and retained.
cheers
Bruce
On Mon, 14 Oct 2019, Asim Hassan wrote:
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Good afternoon,
I would like to know is there a way to run recon-all on subjects in whi
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Good afternoon,
I would like to know is there a way to run recon-all on subjects in which
manual edits have been done on the brainmask.mgz files?
Or at least incorporate manually edited brainmask files into the recon-all
process?
Thanks!
Asim
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Here is how I made the label into a surface overlay:
mri_label2vol --label $label/lh.7Networks_6.label --temp
/data/project/vislab/a/HCP_diff_Sara/fsaverage/mri/orig.mgz --identity --o
$vols/lh.7Networks_6.nii
mri_vol2surf --src $vols/lh.7Networks_6.
Hi Sara
we will need to know the actual commands and the screen output from them
that you ran
cheers
Bruce
On Mon, 14 Oct 2019, Sims, Sara A (Campus) wrote:
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Freesurfers,
I am trying to use mri_mask using surface overlays. I made a label into a
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Time is running out to vote on our BIDS Governance document
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Freesurfers,
I am trying to use mri_mask using surface overlays. I made a label into a
volume and then into a surface with 1s inside the label and 0s outside the
label. I want to make a connectivity map surface overlay with values only
within my labe