Re: [Freesurfer] Permutation simulation produces unexpected results

2020-03-14 Thread Purcell, Juliann
External Email - Use Caution At all other smoothing and threshold combinations, the simulations indicate that there are no significant clusters on the lateral surface of the left hemisphere, but there is a large cluster on the medial surface (lingual gyrus). For 10mm+th.13,

Re: [Freesurfer] Group analysis

2020-03-14 Thread Hengameh Marzbani
External Email - Use Caution I meant the latter. Thank you very much for responding to my questions. I have one more question: Can we do non-parametric approaches by Freesurfer? On Sat, Mar 14, 2020 at 2:13 AM Douglas N. Greve wrote: > Are you asking how to do subcortical

[Freesurfer] tracula error too many ('s

2020-03-14 Thread Renew Andrade
External Email - Use Caution Dear FreeSurfer experts: I mentioned an error that I still cannot fix. I don’t think is the “\” because as you can see in the file attached everything seems correct. I cannot fix the issue with TRACULA I attach the configuration file so you can

Re: [Freesurfer] Error in segmentSubjectT1_autoEstimateAlveusML

2020-03-14 Thread Hoopes, Andrew
Hi Pascale, Maybe try setting the MCR_CACHE_ROOT env variable to somewhere under your user or project directory. It’s possible your OS is deleting the tmp directory after some time. What are the contents of $FREESURFER_HOME/build-stamp.txt? Best Andrew From: on behalf of Pascale Patenaude

Re: [Freesurfer] mri_glmfit and mri_glmfit-sim

2020-03-14 Thread Varun Chandran
External Email - Use Caution Dear Doug, Thank you very much for clarifying my doubt :) kind regards, Varun On Fri, Mar 13, 2020 at 10:40 PM Douglas N. Greve wrote: > It looks like you are using gender as a continuous variable. You should > set up two classes, one for male one