Re: [Freesurfer] Issue with MATLAB 2012 runtime download

Please try: sudo curl "https://surfer.nmr.mgh.harvard.edu/fswiki/MatlabRuntime?action=AttachFile&do=get&target=runtime2014bMAC.tar.gz"; -o "runtime.tar.gz" Cheers, /Eugenio Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com From: o

[Freesurfer] Issue with MATLAB 2012 runtime download

External Email - Use Caution Dear Freesurfer experts, I'm having an issue while attempting to download Matlab 2012 runtime for its use in the hippocampal subfield segmentation. The error is: "Warning: Failed to create the file runtime.tar.gz: Permission denied". See details below:

[Freesurfer] extracting values of each voxel within an ROI

Hi all Is there any command for extracting the fmri activation from all voxels in an ROI? I know I can use funcroi-config, funcroi-sess and funcroi-table-sess to extract the average activation in a specific ROI from a specific contrast. But what if I want to extract the values of each voxel wit

[Freesurfer] SPM Volumes on FSAVERAGE surfaces

External Email - Use Caution All, I'm having trouble getting good surface projections of SPM results. My SPM results come from SPM normalization -- which should be MNI152 space. I'm confused because fsaverage says it is in MNI305 space. I've tried a few commands, but the two tha

Re: [Freesurfer] mri hippocampal subfields:output file

Hi Flavia, Did the hippo subfield routine complete successfully? Are the outputs in the mri directories of the subjects? Did you look at the log files of the subfield routine? Cheers, /E Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.co