[Freesurfer] ERROR: input(s) cannot have multiple frames!

External Email - Use Caution Dear Freesurfer experts, I have a problem with a T1 volume of my dataset and I am not able to understand it. This volume was correctly analyzed by Freesurfer 6. Whan I run recon-all with Freesurfer 7.1 the following error appear: Checking for (invali

[Freesurfer] FW: LGI and Global GI

External Email - Use Caution Is generating a Global hemispheric Gyrification Index possible? From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Alexopoulos, Dimitrios Sent: Wednesday, May 27, 2020 3:39 PM To: Freesurfer support list Subject: [Freesurfer] LGI and Global G

Re: [Freesurfer] ERROR: input(s) cannot have multiple frames!

HI Angela Can you send us the complete command line and screen output of the commands you ran that worked and the ones that failed? Cheers Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Angela Favaro Sent: Sunday, June 28, 2020 8:03 AM To: Freesurfer support list Subject: [F

Re: [Freesurfer] ERROR: input(s) cannot have multiple frames!

External Email - Use Caution Sure! thank you for any help! Angela angelafavaro% recon-all -all -s subj102 Subject Stamp: freesurfer-darwin-macOS-7.1.0-20200511-813297b Current Stamp: freesurfer-darwin-macOS-7.1.0-20200511-813297b INFO: SUBJECTS_DIR is /Users/angelafavaro/Desktop/

Re: [Freesurfer] ERROR: input(s) cannot have multiple frames!

Are you sure 102.mgz is from our analysis previously? We typically name the volumes 001.mgz, 002.mgz, etc From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Angela Favaro Sent: Sunday, June 28, 2020 1:49 PM To: Freesurfer support list Subject: Re: [Freesurfer] ERROR: input(s) cannot

[Freesurfer] Scientific Project Coordinator for an open science, large-scale collaboration

External Email - Use Caution Dear all, If you are seeking a challenge, if you are dynamic and enthusiastic about managing a large consortium of scientists, then do not hesitate to apply for the *Scientific Project Coordinator *position in my group at the Max Planck Institute for

[Freesurfer] Visualizing Talairach Registeration

External Email - Use Caution Hi all, I’m a new FreeSurfer user, so I’d like to thank you all in advance for your patience! After running recon-all to completion, I reviewed the log file and found the warning "#@# Talairach Failure Detection.” I am assuming that this is a warnin

Re: [Freesurfer] ERROR: input(s) cannot have multiple frames!

External Email - Use Caution For this dataset, I named cases 001.mgz 002.mgz ... and controls 101.mgz 102.mgz... But the error message also appear when I rename that volume... ⁣Ottieni BlueMail per Android ​ Il giorno 28 giu 2020, 20:46, alle ore 20:46, "Fischl, Bruce" ha sc

Re: [Freesurfer] ERROR: input(s) cannot have multiple frames!

External Email - Use Caution Yes, I am sure Now I tried to use Freesurfer 6.0 again for that volume and both recon-all and mri_info worked: recon-all -all -s subj102 Subject Stamp: freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c Current Stamp: freesurfer-Darwin-OSX-stable-pub-v6

Re: [Freesurfer] ERROR: input(s) cannot have multiple frames!

Hmmm, can you send us the volume offlist? From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Angela Favaro Sent: Sunday, June 28, 2020 4:53 PM To: Freesurfer support list Subject: Re: [Freesurfer] ERROR: input(s) cannot have multiple frames! External Email - Use Caution Yes, I

Re: [Freesurfer] ERROR: input(s) cannot have multiple frames!

And how did you generate the volumes? I wouldn’t name them 001.mgz, that will end up being confusing. Maybe something like sub.001.mgz might be better, since otherwise we might overwrite some of them From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Angela Favaro Sent: Sunday, June 28,

Re: [Freesurfer] ERROR: input(s) cannot have multiple frames!

External Email - Use Caution What is an offlist? I am running a longitudinal analysis and in the SUBJECTS directory there are now the following folders I had this problem only with subj102 (subj102/mri/orig/102.mgz) subj001 subj001.long.template18 subj003 subj003.long.template

Re: [Freesurfer] error in "recon-all -all -s subject -hippocampal-subfields-T1": exited with errors {Disarmed}

External Email - Use Caution Thank you! From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas N. Greve Sent: 23 June 2020 05:09 To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] error in "recon-all -all -s subject -hippo

Re: [Freesurfer] Error recon-all mri_cc

External Email - Use Caution Hi team, I appreciate everyone is busy, but did anyone have time to look at my subject? It was uploaded on June 18. It’s called yannquide.tar.gz Thanks for your time. Yann > On 22 Jun 2020, at 12:51 pm, Yann Quidé wrote: > > Hi team, > > I was ju