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Dear Freesurfer experts,
I have a problem with a T1 volume of my dataset and I am not able to understand
it.
This volume was correctly analyzed by Freesurfer 6.
Whan I run recon-all with Freesurfer 7.1 the following error appear:
Checking for (invali
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Is generating a Global hemispheric Gyrification Index possible?
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Alexopoulos, Dimitrios
Sent: Wednesday, May 27, 2020 3:39 PM
To: Freesurfer support list
Subject: [Freesurfer] LGI and Global G
HI Angela
Can you send us the complete command line and screen output of the commands you
ran that worked and the ones that failed?
Cheers
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Angela Favaro
Sent: Sunday, June 28, 2020 8:03 AM
To: Freesurfer support list
Subject: [F
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Sure!
thank you for any help!
Angela
angelafavaro% recon-all -all -s subj102
Subject Stamp: freesurfer-darwin-macOS-7.1.0-20200511-813297b
Current Stamp: freesurfer-darwin-macOS-7.1.0-20200511-813297b
INFO: SUBJECTS_DIR is /Users/angelafavaro/Desktop/
Are you sure 102.mgz is from our analysis previously? We typically name the
volumes 001.mgz, 002.mgz, etc
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Angela Favaro
Sent: Sunday, June 28, 2020 1:49 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] ERROR: input(s) cannot
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Dear all,
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for the *Scientific Project Coordinator *position in my group at the Max
Planck Institute for
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Hi all,
I’m a new FreeSurfer user, so I’d like to thank you all in advance for your
patience!
After running recon-all to completion, I reviewed the log file and found the
warning "#@# Talairach Failure Detection.” I am assuming that this is a warnin
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For this dataset, I named cases 001.mgz 002.mgz ...
and controls 101.mgz 102.mgz...
But the error message also appear when I rename that volume...
Ottieni BlueMail per Android
Il giorno 28 giu 2020, 20:46, alle ore 20:46, "Fischl, Bruce"
ha sc
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Yes, I am sure
Now I tried to use Freesurfer 6.0 again for that volume and both recon-all and
mri_info worked:
recon-all -all -s subj102
Subject Stamp: freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c
Current Stamp: freesurfer-Darwin-OSX-stable-pub-v6
Hmmm, can you send us the volume offlist?
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Angela Favaro
Sent: Sunday, June 28, 2020 4:53 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] ERROR: input(s) cannot have multiple frames!
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Yes, I
And how did you generate the volumes? I wouldn’t name them 001.mgz, that will
end up being confusing. Maybe something like sub.001.mgz might be better, since
otherwise we might overwrite some of them
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Angela Favaro
Sent: Sunday, June 28,
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What is an offlist?
I am running a longitudinal analysis and in the SUBJECTS directory there are
now the following folders
I had this problem only with subj102 (subj102/mri/orig/102.mgz)
subj001
subj001.long.template18
subj003
subj003.long.template
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Thank you!
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Douglas N. Greve
Sent: 23 June 2020 05:09
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] error in "recon-all -all -s subject
-hippo
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Hi team,
I appreciate everyone is busy, but did anyone have time to look at my subject?
It was uploaded on June 18. It’s called yannquide.tar.gz
Thanks for your time.
Yann
> On 22 Jun 2020, at 12:51 pm, Yann Quidé wrote:
>
> Hi team,
>
> I was ju
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