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Hello Freesurfer Experts,
I'm trying to create a ROI based on the peak from a paper. The peak on
MNI305 is X=22; Y=-71; Z=22
to use the mri_volsynth I transformed the CRS from MNI to rh.thickness with
the formula:
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Hi Doug,
Thanks for the prompt reply. I did use the label option in mri_glmfit, but it
seemed to just show the same results as the whole brain analysis but for only
in the region defined by the label. When I load the sig scalar into QDEC from
the
No way in qdec. You can do it in mri_glmfit by specifying the --label option
On 8/18/2020 4:22 PM, Erin Moe wrote:
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Hello Freesurfer experts,
Is there a way to constrain an analysis to a label or ROI in QDEC? I
have a group analysis looking at the effect
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Hello Freesurfer experts,
Is there a way to constrain an analysis to a label or ROI in QDEC? I have a
group analysis looking at the effect of inflammatory markers on thickness
however, I’d like to have the analysis be constrained within an ROI rather
Hi Jim,
Yes, that is correct. The infant pipeline is still separate.
Lilla
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Alexopoulos, Dimitrios
Sent: Monday, August 17, 2020 10:52 AM
To: Freesurfer support list
Subject: [Freesurfer] fs7..1.1 and
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Hello FreeSurfer Developers,
I am attempting to use the inverse of the final m3z registration file
produced by mri_cvs_register to take files in mni152 space back into my
subject's space. I used mri_vol2vol with the --inv-morph flag to accomplish
this.
Use either mri_aparc2aseg (v6) or mri_surf2volseg (v7). These are used
to create the aparc+aseg.mgz. You can look in the recon-all.log file for
an example command line.
On 8/17/2020 5:03 PM, Thomas Alderson wrote:
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Dear Freesurfer experts,
Although this
