Re: [Freesurfer] Queries on Freeview and opening files of 'stat' and 'surf' folders

External Email - Use Caution Thanks Ruopeng. Can you please answer *why I won't be able to open files in 'stat','surf' folder.* It seems an application is required to open it. Can you tell please? Thank you, KC On Fri, Oct 2, 2020 at 8:25 PM Wang, Ruopeng wrote: > Hi KC, > > Fre

Re: [Freesurfer] Seed ROI FC

Do you have a /scratch folder? Also, please send the full terminal output On 10/2/2020 5:44 AM, Lorenzo Pini wrote: External Email - Use Caution Dear expert I'm trying to perform FC seed ROI analysis through FSfast pipeline After preprocessing I run: selxavg3-sess -s subject1 -a fsres

Re: [Freesurfer] QDEC command not found

We are no longer distributing or supporting qdec On 10/2/2020 6:17 AM, Enrico Collantoni wrote: External Email - Use Caution Dear freesurfer experts, I installed the 7.1.1 version of freesurfer in iOS enviroment (10.15.4). I could run the recon-all without any problems. However, tryin

Re: [Freesurfer] Use ICV measures from freesurfer v7.1.0 to correct cortical volumes extracted from freesurfer v6.0

I think it is probably ok, but why not use the ICV from v7? On 10/2/2020 5:37 AM, Jayachandra Raghava wrote: External Email - Use Caution Hello Freesurfer Developers, I have extracted ICV measures using samseg from freesurfer v7.1.0. I would like to use this measure to correct the c

Re: [Freesurfer] Queries on Freeview and opening files of 'stat' and 'surf' folders

Hi KC, Freeview is a comprehensive volume and surface viewer and editor. You can load mri, surf and label files in it. Regarding your last question, if you meant going through slices, you can use up/down arrow keys. If you meant going through different volume images, you can use Alt+C key to cy

Re: [Freesurfer] How to draw streamlines and their corresponding ROIs using freeview {Disarmed} {Disarmed}

Hi Zhiyuan, You can load the file as volume and select Lookup Table as the color map to show labels. Best, Ruopeng On Oct 1, 2020, at 6:01 PM, Zhiyuan Yu mailto:z...@my.fsu.edu>> wrote: External Email - Use Caution Hi Ruopeng, I am trying to load ROI file in freeview to display the

Re: [Freesurfer] grey matter thickness map and SNR

Only that the parametric assumptions are better met and so mcz controls the FPR better On 9/30/2020 2:29 PM, miracle ozzoude wrote: External Email - Use Caution Hello Doug, Any advantages of surface-based smoothing of the gm thickness maps beside increasing signal to noise ratio? I

[Freesurfer] QDEC command not found

External Email - Use Caution Dear freesurfer experts, I installed the 7.1.1 version of freesurfer in iOS enviroment (10.15.4). I could run the recon-all without any problems. However, trying to open qdec I obtain "command not found". I've never had this problem with previous versio

[Freesurfer] Seed ROI FC

External Email - Use Caution Dear expert I'm trying to perform FC seed ROI analysis through FSfast pipeline After preprocessing I run: selxavg3-sess -s subject1 -a fsrest.surf.lh -no-con-ok -svres but I got the following error: ERROR: /bin/bash: /scratch/tp9f57a7bb_2ea1_450b_b0e8

[Freesurfer] Use ICV measures from freesurfer v7.1.0 to correct cortical volumes extracted from freesurfer v6.0

External Email - Use Caution Hello Freesurfer Developers, I have extracted ICV measures using samseg from freesurfer v7.1.0. I would like to use this measure to correct the cortical volumes that i have extracted from the same subjects using freesurfer v6.0. 1) Is it advisable to

[Freesurfer] Infant FreeSurfer issues

External Email - Use Caution Hi FreeSurfer team, I’ve been using the Infant FreeSurfer pipeline on 3DT1 sequences for few weeks now on infants from 0.4 to 5.4 years-old. I know Infant FreeSurfer is recommended for 0-2 years old infant but standard FreeSurfer was failing due to