[Freesurfer] cannot find freesurfer/average/RB_all_2008-03-26.gca with -use-gpu in v5.3

2020-12-12 Thread Caspar M. Schwiedrzik
External Email - Use Caution Hi! I am trying to run recon-all in version 5.3 with the -use-gpu flag. I am getting a strange error that I would love to get your input on: cannot find freesurfer/average/RB_all_2008-03-26.gca Neither the file nor the path exist. This is the entire i

Re: [Freesurfer] About volumetry results by Freesurfer

2020-12-12 Thread Fischl, Bruce
HI Fahimeh You need to give us a lot more information. What kind of scans did you acquire? Were they the same across time? Were they on the same scanner? Were any upgrades or similar performed in between the scans. We don’t generally find growth like this in adult populations Cheers Bruce Fro

Re: [Freesurfer] need assistance to decode QDEC results

2020-12-12 Thread vittal korann
External Email - Use Caution Dear FreeSurfer experts, A gentle reminder pertaining to my previous email! Thanks, *VK* On Wed, Dec 9, 2020 at 11:28 PM vittal korann wrote: > Dear FreeSurfer experts, > > I was running group interaction (for diagnosis and birthplace) in QDEC > w

[Freesurfer] Error in selxavg3-sess

2020-12-12 Thread Nina Khatibi
External Email - Use Caution Hi, I'm using a functional analyse with selxavg3-sess, i have 25 subjects and each subject contains 15 runs, I've done plenty of analyses with different paradigm files, but now with a paradigm file of 5 conditions, I face an error on subject 22 run 12,