External Email - Use Caution Hi! I am trying to run recon-all in version 5.3 with the -use-gpu flag. I am getting a strange error that I would love to get your input on: cannot find freesurfer/average/RB_all_2008-03-26.gca Neither the file nor the path exist.
This is the entire input and output: recon-all -s hum_14600_parallel -i /neuro_tools/freesurfer/subjects/hum_14600/mri/011/mp2rage.nii -all -use-gpu Testing for CUDA device: nvcc: NVIDIA (R) Cuda compiler driver Copyright (c) 2005-2012 NVIDIA Corporation Built on Fri_Sep_21_17:28:58_PDT_2012 Cuda compilation tools, release 5.0, V0.2.1221 Driver : 10.0 Runtime : 5.0 Acquiring CUDA device Using default device CUDA device: Tesla K40m ======= NUMBER OF OPENMP THREADS = 1 ======= stable5 NVIDIA driver version info: NVRM version: NVIDIA UNIX x86_64 Kernel Module 410.79 Thu Nov 15 10:41:04 CST 2018 ERROR: cannot find /neuro_tools/freesurfer/average/RB_all_2008-03-26.gca Is there some documentation on how to set up the environment beyond LD_LIBRARY_PATH? Could that be the issue? Everything works fine without the -use-gpu flag. Thank you! Caspar
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