Re: [Freesurfer] How to edit GM when WM is ok

External Email - Use Caution Thank you for your response! I followed the instructions for FTP file exchange. And did then: ftp> cd transfer/incoming ftp> put filename.txt Are the images not there? Cheers Carolin On Fri, Mar 26, 2021 at 3:20 PM Fischl, Bruce wrote: > Hi Carolin

Re: [Freesurfer] How to edit GM when WM is ok

Hi Carolin Where did you upload the images? Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Caroline Chwiesko Sent: Friday, March 26, 2021 6:08 PM To: Freesurfer support list Subject: Re: [Freesurfer] How to edit GM when WM is ok External Email - Use Caution Hello Bru

Re: [Freesurfer] How to edit GM when WM is ok

External Email - Use Caution Hello Bruce, I wrote a week ago to this mailing list to ask for advice about how to edit an issue where an entire Gyrus will not be captured by the pial surface. I uploaded some images to show what that looks like. I just wanted to send a friendly remin

Re: [Freesurfer] Can FS use the recon all command to automatically divide it into DKT32 areas?

Hi I'm not entirely sure what the question is, but if you run recon-all on appropriate input data you will get a DKT parcellation as one of the outputs Cheers Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of 1248742467 Sent: Thursday, March 25, 2021 10:59 PM To: freesurfer Sub

Re: [Freesurfer] Problem with freesurfer measures

External Email - Use Caution Hello Douglas, i tried but when i look at the wmparc.mgz created by the code >>mri_aparc2aseg --s 215 --labelwm --hypo-as-wm --rip-unknown --volmask --o mri/wmparc.mgz --annot myAAL it takes the index and the names from FreeSurferColorLUT instead of the