[Freesurfer] Postdoctoral position at Massachusetts General Hospital / Harvard Medical School

External Email - Use Caution Postdoc Position in the Department of Radiology, Massachusetts General Hospital / Harvard Medical School The Gordon Center for Medical Imaging (GCMI) in the Department of Radiology at Massachusetts General Hospital (MGH) and Harvard Medical School

Re: [Freesurfer] make_average_subject error

External Email - Use Caution Hi Douglas, Just following up on this. Thanks! On Wed, Mar 17, 2021 at 6:12 PM Jordan Mullins wrote: > Yes! Results attached. > > On Wed, Mar 17, 2021 at 5:54 PM Douglas N. Greve > wrote: > >> >> Can you run >> ls -l $FREESURFER_HOME/bin/mri_aparc2

[Freesurfer] Fwd: Three researcher positions (doctoral candidates) in visual perception and educational neuroscience

External Email - Use Caution The Educational Neuroscience Lab at the Philipps Universität Marburg (Germany) is currently recruiting up to three Doctoral Candidates. Two positions are aimed at candidates who are interested in simultaneously pursuing their doctorate as well as trai

[Freesurfer] Running recon-all with FLAIR

External Email - Use Caution Dear All, We are running recon-all on the latest version of FreeSurfer (v7.1.1). We are using both T1 and FLAIR images to better define the pial surfaces, but when we run the recommended command line (recon-all -subject subjectname -i /path/to/input_vo

Re: [Freesurfer] How to edit GM when WM is ok

External Email - Use Caution Hello Bruce, i don t have a good understanding of how the upload works so i just called those files img1.png, img2.png and img3.png thinking that you will be able to connect those files with my email address. I uploaded now the entire zipped subject di

Re: [Freesurfer] How to edit GM when WM is ok

Thanks. What are the voxel coords of the location you wanted us to take a look at? From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Caroline Chwiesko Sent: Monday, March 29, 2021 5:54 PM To: Freesurfer support list Subject: Re: [Freesurfer] How to edit GM when WM is ok Exter

[Freesurfer] functional to anatomical registration question

Dear Freesurferers, I have a question and I appreciate it much if you could please reply. I need to know how to check subcortical functional to anatomical registration. I know for checking the cortical registration I can use the below command: tkregister2 --s $subj --mov template.nii.gz --surf

Re: [Freesurfer] How to edit GM when WM is ok

External Email - Use Caution RAS: 6.11, 57.54, 60.36 brainmask [120, 98, 191] Talairach 115.59, 127.61, 202.35 On Mon, Mar 29, 2021 at 3:08 PM Fischl, Bruce wrote: > Thanks. What are the voxel coords of the location you wanted us to take a > look at? > > > > *From:* freesurfer-b

Re: [Freesurfer] How to edit GM when WM is ok

External Email - Use Caution Because the dataset is already uploaded would it be possible to also look at the following in this dataset?: For editing of the subcortical segmentation in the aparc+aseg file, there is a spot where I can not figure out if this structure is supposed to