Re: [Freesurfer] mri_cor2label --surf "dim mismatch between surface"

2022-01-28 Thread Douglas N. Greve
Not sure what you are trying to do. extracting the vent vol to a surface does not make sense to me On 1/28/2022 1:23 PM, Zeng, Qi wrote: External Email - Use Caution Hi, I saw the same question has been asked and no answer was provided: I run    "mri_cor2label --c

Re: [Freesurfer] Transform a surface (e.g., lh.white) with a register.dat (12 dof)

2022-01-28 Thread Douglas N. Greve
See the --lta option to mris_apply_reg On 1/28/2022 10:07 PM, Yixin Ma wrote: External Email - Use Caution Hi FreeSurfer developer, I want to transform surfaces files (lh.white, lh.pial, rh.white, and rh.pial) with a registration matrix that has 12 degrees of freedom. Is there a

[Freesurfer] Transform a surface (e.g., lh.white) with a register.dat (12 dof)

2022-01-28 Thread Yixin Ma
External Email - Use Caution Hi FreeSurfer developer, I want to transform surfaces files (lh.white, lh.pial, rh.white, and rh.pial) with a registration matrix that has 12 degrees of freedom. Is there a function in FreeSurfer that can do so? Very best, Yixin Ma

Re: [Freesurfer] Reading files from a hard drive (on Windows in the Fressurfer Ubuntu VM)

2022-01-28 Thread fsbuild
External Email - Use Caution Please see the updated documentation in the previous announcement about how to share/mount an external hard drive at

[Freesurfer] Freesurfer Ubuntu VM documentation updated

2022-01-28 Thread fsbuild
External Email - Use Caution The Freesurfer Ubuntu VM documentation has been updated to describe how to mount an external drive plugged into the Windows machine in the VM. See towards the bottom of the page under "Share a directory ...",

[Freesurfer] mri_cor2label --surf "dim mismatch between surface"

2022-01-28 Thread Zeng, Qi
External Email - Use Caution Hi, I saw the same question has been asked and no answer was provided: I run "mri_cor2label --c fsaverage/mri/aseg.mgz --id 4 --l fsaverage/label/Left-Lateral-Ventricle.label --surf fsaverage lh"- to hopefully extract lateral