Re: [Freesurfer] PET-segmentattion

2022-08-10 Thread Bouchra Guelib
External Email - Use Caution I fix it by adding --id 'segmentation id' to mri_segstats. Thanx Douglas. Le mer. 10 août 2022 à 03:51, Douglas N. Greve a écrit : > Can you send the terminal output and the petsuv.segstats.dat? How have you > verified that the registration is cor

[Freesurfer] Converting Freesurfer Cortical Thickness Output into 32K space

2022-08-10 Thread Ariana Fei
External Email - Use Caution Hi, Just wondering if anyone has any experience with converting freesurfer cortical thickness output into 32K space (or native space/164k space/96k space) and can share the script you use to do it? Thanks so much! Ariana Fei __

Re: [Freesurfer] sclimbic sometimes does not detect left basal forebrain

2022-08-10 Thread Miriam Taza
External Email - Use Caution oh interesting, do you recommend rerunning all with -percentile 99.9? Would it make much difference to the results? or would it be ok to just run those with missing left? From: freesurfer-boun...@nmr.mgh.harvard.edu

Re: [Freesurfer] sclimbic sometimes does not detect left basal forebrain

2022-08-10 Thread Miriam Taza
External Email - Use Caution but this(bright at back and nose) also seems to be the case with participants that sclimbic did work on.. From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas N. Greve Sent: Tuesday, August 9, 2022 10:

Re: [Freesurfer] FSFAST first level covariates

2022-08-10 Thread Angela Fang
External Email - Use Caution Hello, Just re-sending my question below. If I have a variable with 2 levels (yes/no) and another variable that is continuous, based on this post (https://secure-web.cisco.com/1S2s08xk6_r2FFsEB5S1KdOcfq6G8ToJwyZuNFONdwgOYd87JJkB-uznJW2pelg24KQwX3lweV

Re: [Freesurfer] mri_robust_template - MyMatrix::RotationMean Error

2022-08-10 Thread Andrew Beaudin
External Email - Use Caution Hi Doug, I am following up your reply to this issue as I am still trying to find a solution to this issue. For your questions - yes, I reviewed the images in freeview (and fsleyes) and there are no obvious issues with them (i.e., neither are missi

[Freesurfer] freeview crashes after new fs install

2022-08-10 Thread Miriam Taza
External Email - Use Caution Hi, I recently installed the new FS on my mac. I renamed my old "freesurfer" folder as instructed on the wiki. However now freeview crashes. it opens but when i try to load volume it crashes. Below you will find the report. (this happens if I use eith

Re: [Freesurfer] freeview crashes after new fs install

2022-08-10 Thread fsbuild
External Email - Use Caution The wiki information may be out of date.  Having multiple versions of freesurfer installed on your system may cause running an application bundle like freeview.app to crash if the system is confused about which version of freesurfer is installed.  So