[Freesurfer] mri_glmfit error

External Email - Use Caution Hi, I attempted to execute mri_glmfit on my structural data through the following command - mri_glmfit --y lh.10.teste.thickness.mgh --fsgd testCT.fsgd --C Contrasts/LR-HR_testcov.mtx --C Contrasts/LR-MDD_testcov.mtx --C Contrasts/HR-MDD_testcov.mtx

Re: [Freesurfer] tissue type not set in mri_compute_volume_fractions

Your first command should do the trick. What version of FS are you using? The version of that program is over 7 years old. I just ran it with that command line in 7.3.2, and it worked. On 9/28/2022 8:35 AM, Bauer, Martin wrote: External Email - Use Caution Dear Freesurfer experts, I

Re: [Freesurfer] White matter normalization of FLAIR images

If you just want to normalize the flair, you can run samseg on it, ie, samseg --i flair.mgz --o samseg.flair in the output folder you will find a bias corrected volume On 9/28/2022 7:42 AM, James Brown wrote: External Email - Use Caution Dear Dr Bruce, Thank you very much for answerin

[Freesurfer] Ask for password to open .7z file

External Email - Use Caution Dear all, I kindly ask for the needed password to open the virtual machine FS_7_2_0_ubuntu_18_04_06.ova.7z Best regards. [firma_r2_c1] Gracián García Martí Ingeniero Área de Imagen Médica Cuantitativa [firma_r4_c2] [firma_r2_c1] [firma_r1_c3] A

[Freesurfer] MRI & PET positions available - BBRC Barcelona

External Email - Use Caution The Barcelonabeta Brain Research Center is welcoming applications for two neuroimaging analyst positions (MRI & PET) to help analyze longitudinal MRI and PET imaging data collected in the ALFA+ project ( https://secure-web.cisco.com/1coUA_P7zLcvpSWy46GK