[Freesurfer] mri_glmfit with doss isn't working. v7.2

2022-12-30 Thread miracle ozzoude
External Email - Use Caution Hello, I have 2 groups (group 1 = 3 members, group 2 = 12 members) and I did like to regress out the effects of groups + other variables by using doss. However, whenever I specify doss with the mri_glmfit command, it gives me an error message (see belo

Re: [Freesurfer] Help: Aparcstats and asegstats not working

2022-12-30 Thread vittal korann
External Email - Use Caution Thanks, Yujing, for your quick response. I tried your suggestion as well but the same error keeps appearing. $ asegstats2table --subjects Met001_1 Met002_1 Met003_1 Met005_1 Met006_1 Met007_1 Met008_1 Met009_1 Met012_1 Met013_1 Met015_1 Met016_1 Met01

Re: [Freesurfer] Help: Aparcstats and asegstats not working

2022-12-30 Thread vittal korann
External Email - Use Caution Thanks, for your quick response. I installed python2 and did set the default version to python 2.7.18 via aliasing. But I am getting the same old errors again. The same terminal responses were listed below. The subjects that are used for aseg/aparc are

[Freesurfer] Freeview crashes after installing the software

2022-12-30 Thread Seyedeh Nasim Adnani
External Email - Use Caution Hello, I have a MacBook Pro with Ventura 13.1 OS, 64 GB, SMC Apple M1 Max. I recently started installing the freesurfer software but unfortunately, a simple volume loading into the freeview crashes without displaying any image. I have tried installing

Re: [Freesurfer] Help: Aparcstats and asegstats not working

2022-12-30 Thread Huang, Yujing
Hi Vittal, I can only repro your error by running ‘python asegstats2table …’. And the alias solution works for me. Running ‘asegstats2table’ directly doesn’t give me any errors, and it doesn’t need the alias setting. Best, Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of f