Re: [Freesurfer] FreeSurfer atlas and statistics question

Hi Jacob, I hope this page will provide some information you are looking for - https://surfer.nmr.mgh.harvard.edu/fswiki/CorticalParcellation BA/BA.thresh stats are computed with annotations created from a set of labels included in Freesurfer. I think by default Freesurfer uses ?h.aparc.annot

Re: [Freesurfer] samseg error: illegal hardware instructions

External Email - Use Caution Hello Jacky, You can try the procedure listed below, which was posted to the list around Dec. 12th. It might work for 7.3.1 release, though I have only tried it on the 7.3.2 release. If it does not work for you on 7.3.1, then I would download and

[Freesurfer] FSL on recon-all

External Email - Use Caution Hello FreeSurfers, I just need to know if the FSL is used in the recon-all scripts. Basically if FSL_DIR is different will the recon-all produce different values. Thank you Aaron. ___ Freesurfer mailing list

Re: [Freesurfer] mri_glmfit

Hi James, Did mri_annotation2label commands create lh.lobes.annot and rh.lobes.annot in fsaverage/labels directory? They are annot files. You can use mri_annotation2label to break them into label files. Best, Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of James Brown

[Freesurfer] FreeSurfer atlas and statistics question

To whom it may concern among FreeSurfer staff, My colleagues and I have performed an analysis with FreeSurfer that is under peer review. The reviewer has asked that we detail each atlas relied upon and connect that with each of the statistics that we relied upon in our analysis. The statistics

[Freesurfer] samseg error: illegal hardware instructions

External Email - Use Caution Hi FreeSurfer developers, I was trying to do lesion segmentation and calculation with FreeSurfer samseg function on my MS subjects as described here: