Hi James,
Did mri_annotation2label commands create lh.lobes.annot and rh.lobes.annot in
fsaverage/labels directory?
They are annot files. You can use mri_annotation2label to break them into label
files.
Best,
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of James Brown
Sent: Thursday, January 19, 2023 7:19 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] mri_glmfit
External Email - Use Caution
Dear FS experts,
I am working on a surface based analysis using FS 7.1.1 and I would like to run
mri_glmfit between two groups using the flag "--label" to restrict analysis
within lobes.
I ran these commands on fsaverage
mri_annotation2label --subject fsaverage --hemi lh --lobesStrict lobes
mri_annotation2label --subject fsaverage --hemi rh --lobesStrict lobes
This created annotation files within the "labels" folder of fsaverage, then I
ran mri_glmfit using the flag --label lh.lobes from fsaverage
I got this error message
mri_glmfit: could not scan # of lines from label file
I am ot sure what I am doing wrong. Thanks for guidance
James
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Mass General Brigham
Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline
<https://www.massgeneralbrigham.org/complianceline> .
Please note that this e-mail is not secure (encrypted). If you do not wish to
continue communication over unencrypted e-mail, please notify the sender of
this message immediately. Continuing to send or respond to e-mail after
receiving this message means you understand and accept this risk and wish to
continue to communicate over unencrypted e-mail.
