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Dear Freesurfer experts,
Should I expect Freesurfer 7 to significantly improve segmentation of the
Temporal Lobe when compared to Freesurfer 6? I often see sub-optimal
segmentation of this region in Freesurfer 6 and I am wondering if an
upgrade to 7 w
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Hello all,
I am having an issue when trying to run infant_recon_all. The error that I am
getting is
/opt/apps/software/FreeSurfer.7.2.0-centos7_x86_64/bin/atlassubjects.csh No
such file or directory.
I have searched through the bin folder
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Is the student version of MATLAB enough to run in the background? Our
institution does not provide a license unfortunately. I tried using octave
but i can't seem to get octave to work.
Best,
Justin Oh
On Thu, Jan 12, 2023 at 9:38 AM Douglas N. Greve
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Dear experts,
this is the first time I have used Freesurfer. I am a clinician and I don't
have previous experience. I followed wiki instructions. I have a group of
T1 images. I need cortical thickness and cortical gray matter volume
measurements . I ran
Probably not. What do you mean by "suboptimal"?
On 1/25/2023 5:50 AM, Michele Valotti wrote:
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Dear Freesurfer experts,
Should I expect Freesurfer 7 to significantly improve segmentation of
the Temporal Lobe when compared to Freesurfer 6? I often see
sub-
I assume you mean on an ROI basis. They are usually correlated in some
way because volume = thickness*area. The only way they could not be
correlated is if the area were to change opposite to thickness -- but
almost always they are both moving in the same direction, down:(
On 1/25/2023 10:25
I have not idea, try it and see.
On 1/25/2023 9:25 AM, Justin Oh wrote:
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Is the student version of MATLAB enough to run in the background? Our
institution does not provide a license unfortunately. I tried using
octave but i can't seem to get octave to work
That basically looks right. One thing to note is that you are sampling
onto the average surface (fsaverage); this is not really doing
surface-based analysis, it will be about the same as registering you
individual subject to the mni152, then sampling your ROI atlas onto the
individual subject'
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Hi,
May I have the password for FS_7_2_0_ubuntu_18_04_06.ova?
Thank you,
Don
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The infor
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My bash profile currently sets up my freesurfer environment with each
terminal. Should I also be exporting matlab into my environment and define
a path to the application? If so what should i include in my bash profile.
On Wed, Jan 25, 2023 at 11:00 AM
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Hi,
I am new to this mailing list.
I was wondering how I could get the password for FS_7_2_0_ubuntu_18_04_06.ova.
Thank you,
Don
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Justin Oh
Sent: Wednesday, January 25, 2023 12:19 PM
To: Fre
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Hi,
How can I extract Yeo volumes by each network (for 7 or 17 network) for
individual participants from FreeSurfer? I'm getting the same value for
each participant, presumable because it's only pulling volumes from the
template. Tried looking up the p
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Dear FreeSurfer,
I am using the FieldTrip software to process MEG data, it involves my using the
function ft_read_mri() in MATLAB to read in the anatomical MRI file. I have
tried feeding into this function a .nii.gz as well as the unzipped .nii
vers
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