Re: [Freesurfer] Freeview segmentation fault

External Email - Use Caution You can set the environment variable FS_LICENSE to point to your license file. Some people set that in their shell init file, e.g., .bashrc, and keep the file license.txt in their home directory. For example, $ cd $HOME$ head -1

[Freesurfer] Updating to Current Version of Freesurfer

External Email - Use Caution Hello, We have been using Freesurfer v7.1.1 to process our data. We want to update to the v7.3.2. Can we continue to use the files from v7.1.1 which have our edits applied on the 7.3.2 version? Do we need to re-run recon-all on the files now using

Re: [Freesurfer] -gcareg dropped from -autorecon2-volonly

External Email - Use Caution Hi Doug, Sorry for the delay. CAReg shows up, but not GCAReg: $ grep -A6 "case .-autorecon2-volonly" $FREESURFER_HOME/bin/recon-all case "-autorecon2-volonly": set DoRemoveNeck = 0; set DoSkullLTA = 0; set DoSegStats

Re: [Freesurfer] Freeview segmentation fault

No, I meant the freesurfer license file. Where is the file located on your hard drive? From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of OSE KADIRI Sent: Tuesday, April 4, 2023 3:44 PM To: Freesurfer support list Subject: Re: [Freesurfer] Freeview

[Freesurfer] mri_glmfit correction across lobes

External Email - Use Caution Hello Freesurfer, Currently, I am using the Petsurfer manual, which is easily understandable and clear. Nonetheless, I have a question regarding the "mri_glmfit" step. As far as I know, this command is used to correct data for multiple comparisons

Re: [Freesurfer] Freeview segmentation fault

External Email - Use Caution Hello, It was added to my ~/.bashrc file. Is this what you mean? Thank you, Ose On Tue, Apr 4, 2023 at 7:57 AM Wang, Ruopeng wrote: > Where is your license file located? > > On Apr 4, 2023, at 2:26 AM, OSE KADIRI wrote: > > External Email

Re: [Freesurfer] Freeview segmentation fault

Where is your license file located? On Apr 4, 2023, at 2:26 AM, OSE KADIRI mailto:osekad...@g.ucla.edu>> wrote: External Email - Use Caution Hello, I am having some trouble using Freeview on my university cluster with my MacBook (macOS Monterey version 12.4). Freeview works fine

Re: [Freesurfer] FLAIRpial bug

External Email - Use Caution Dear developers, Did you have time to look at the problem with flairpial flag? Thank you Silvia From: "Silvia De Francesco" To: "freesurfer" Sent: Wednesday, March 29, 2023 5:42:43 PM Subject: [Freesurfer] FLAIRpial bug External Email -

[Freesurfer] FreeSurfer VM pass code

External Email - Use Caution Hello, I would like to request the pass code for the FreeSurfer Virtual VM image. Best, T. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

[Freesurfer] Volume extraction of thalamus subfields in v7.3.2

External Email - Use Caution Dear Freesurfers, as already mentioned in a mailing list post

Re: [Freesurfer] Issue with running recon-all on Synthsr output

Hi Hengameh, It looks like you missed '-all' option at the end. Best, Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of hmarz...@student.ubc.ca Sent: Monday, April 3, 2023 5:32 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Issue with running recon-all on Synthsr

[Freesurfer] How to create a functional ROI on surface where activation is peak?

External Email - Use Caution Dear FreeSurfer developers, Hi. I've always appreciated your help. I am writing this email to kindly ask you how to create a functional ROI where activation (which is a result of FS-FAST) is peak. In volume-based analysis, people often make a

[Freesurfer] Freeview segmentation fault

External Email - Use Caution Hello, I am having some trouble using Freeview on my university cluster with my MacBook (macOS Monterey version 12.4). Freeview works fine from a Windows machine, but when I try to view images (using XQuartz on my Mac), I get "segmentation fault." It